RNA id: TU486480



Basic Information


Item Value
RNA id TU486480
length 210
lncRNA type intronic
GC content 0.44
exon number 2
gene id G429457
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66543793 ~ 66544061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttgCCAATCTTTATTCAAGGAGAGAGGAATTGGGAGGGGTTTGGGGGTTGGTCTTTCTAGCGGATGAGAGAACAGTGGAGTTGTTGTCAGATGCAGGTGCCCCGACCCAAGCATACACAGAGAGGAGAAAAATTGTTCTTACAGTTATTGAAATACATCTAAGCGGTGGAACTTCCAAATGACTTCTGTGAATATTGTAGGTACGGTATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU486407 lncRNA downstream 23475 66514545 ~ 66520318 (-) True LOC110524386
TU486438 lncRNA downstream 50160 66493432 ~ 66493633 (-) True G429421
TU486412 lncRNA downstream 54013 66489555 ~ 66489780 (-) True G429395
TU486436 lncRNA downstream 61506 66481304 ~ 66482287 (-) True G429419
TU486308 lncRNA downstream 160004 66379720 ~ 66383789 (-) True G429304
TU486502 lncRNA upstream 109267 66653328 ~ 66656383 (-) False LOC110524385
TU486503 lncRNA upstream 109267 66653328 ~ 66656383 (-) False LOC110524385
TU486504 lncRNA upstream 109267 66653328 ~ 66656383 (-) True LOC110524385
TU486594 lncRNA upstream 164214 66708275 ~ 66708915 (-) True G429556
TU486601 lncRNA upstream 176260 66720321 ~ 66720537 (-) True G429563
XR_002473579.2 mRNA downstream 22421 66514473 ~ 66521372 (-) False LOC110524386
XM_036976524.1 mRNA downstream 151871 66389023 ~ 66391922 (-) True LOC118964532
XM_036978114.1 mRNA downstream 208448 66281727 ~ 66335345 (-) False adamts10
XM_036978115.1 mRNA downstream 208448 66281727 ~ 66335345 (-) True adamts10
XM_036978116.1 mRNA downstream 214384 66281727 ~ 66329409 (-) False adamts10
XM_036978133.1 mRNA upstream 110430 66654491 ~ 66659137 (-) False LOC110524385
XM_021603977.2 mRNA upstream 110430 66654491 ~ 66659138 (-) False LOC110524385
XM_036978132.1 mRNA upstream 122476 66666537 ~ 66676709 (-) True LOC110524389
XM_036978134.1 mRNA upstream 176701 66720762 ~ 66736749 (-) False LOC110524390
XR_002473580.2 mRNA upstream 176701 66720762 ~ 66736749 (-) False LOC110524390
TU484971 other downstream 1161203 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1532195 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1632795 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1810821 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1837768 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 242990 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1266544 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1267425 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1796143 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2155760 68699821 ~ 68707448 (-) True G432310

Expression Profile