RNA id: TU485984


Basic Information

Item Value
RNA id TU485984
length 232
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G429001
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66707547 ~ 66707778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatgagactcaaaattgagctcaggtgcatcctgtttccattgatcatccttgagtagtttctacaacttgattggattccacctgtggtaaattcaattgattggacatgatttggaaaaatacacacctgtctatataaggtcccacagttgacagtgcacgtcagagcaaaaaaccaagccacaaggtcgaaggaattgtccgtagagctcagagtcAGGATTGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485975 lncRNA upstream 9548 66671245 ~ 66697999 (+) True G428992
TU485826 lncRNA upstream 49518 66656735 ~ 66658029 (+) True G428857
TU485896 lncRNA upstream 197283 66509902 ~ 66510264 (+) True G428922
TU485892 lncRNA upstream 200929 66506279 ~ 66506618 (+) True G428918
TU485886 lncRNA upstream 208949 66498360 ~ 66498598 (+) True G428912
TU486016 lncRNA downstream 45457 66753235 ~ 66753453 (+) True G429028
TU485818 lncRNA downstream 77159 66784937 ~ 66785516 (+) True LOC110524392
TU486059 lncRNA downstream 132919 66840697 ~ 66884634 (+) True rpp21
TU486092 lncRNA downstream 178405 66886183 ~ 66886424 (+) True G429102
TU486093 lncRNA downstream 179882 66887660 ~ 66887884 (+) True G429103
XM_021603979.2 mRNA upstream 3404 66676828 ~ 66704143 (+) False osbpl1a
XM_036978130.1 mRNA upstream 3404 66676828 ~ 66704143 (+) False osbpl1a
XM_021603978.2 mRNA upstream 3404 66676829 ~ 66704143 (+) False osbpl1a
XM_036978131.1 mRNA upstream 3404 66681769 ~ 66704143 (+) True osbpl1a
XM_036978124.1 mRNA upstream 73275 66521798 ~ 66634272 (+) False LOC110524384
XM_036978138.1 mRNA downstream 61236 66769014 ~ 66776718 (+) False LOC110524391
XM_036978137.1 mRNA downstream 61238 66769016 ~ 66776718 (+) False LOC110524391
XM_021603985.2 mRNA downstream 61239 66769017 ~ 66776718 (+) False LOC110524391
XM_021603986.2 mRNA downstream 61239 66769017 ~ 66776718 (+) False LOC110524391
XM_021603983.2 mRNA downstream 61240 66769018 ~ 66776718 (+) False LOC110524391
TU485654 other upstream 564942 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 1186167 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1678845 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 274171 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 752951 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 752951 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1395401 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1504938 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile