RNA id: TU486613


Basic Information

Item Value
RNA id TU486613
length 1619
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G429574
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66744888 ~ 66748852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaggacgacggtcctatgtcagaatggttcagacaataactacagaacaaagccaGCATCAGCGCGAGCTTTGGtggcgaatggtatgaactttgaactcttattcactacagaagtgatacctcctagccgttgagttagcaacagcagatgcaaacgagggttaggaaggaacagacagagtatcccgtctaccacacaacgacattacaacaacgtatccaattgaccaccagagacattcttcaagggacaaaggactcggttgggcaacacagccatccatctaccaccaacctactgaagtgcagctcagagacctgagccctaggaccatgcctcaggatacCTGGCAGgatgacttcttgctgtccccagtccacctggtcgtgctgctgctctagtttcaactgttctgcctgcggctatggaatcctgacctgtcccctggacgtgctacctgtcccagacctattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagcggactggccacccctcatagcctggttcctctctcggtttcttcctaggttttggcctttctagggagtttttcctagtcaacgtgcttcaacacctgcattgcttgctgtttggggttttaggctgggtttcagtacagcactttgagatatcagctgatgtacgaagggctgtataaatacatttgatttgatttaataaccAGAACCAAAGTGAACTCCACTGTTTTTGACAAGGAGGTTTTTAACAGGGACATCTCTGGGGAAACATTCTGGATTTGATACTAGCTTGATGACATGACAGTTTGCCCATGATGGAAACCGCTCCCTTGTAATCCTGTTTGCTTACTATTTCTCTAGAGTTTAGCAAGATGCTGAGGCCAGTCTCACACACAGCTTTACATCACAGTCCAAGTGTCTAAGGAGAGTTAGCAGCTAAACACAGCAGTTGGCCTCCTCAACCTGGACACTAACAGTGTGGTCTTCTACGTGGACGGCTATCCTGATGACGTCACTGTAATTACAATCCTCTATCCCTTTGTCTCGCAGGTGCGTTGTGCCTCTGCATCATCCTCAGATTGTTGAATACAGAAGTACACTTTACTAGTCTGTAATCAGCGGGACCAGTCTTATTCTCCATATTCAAGTTTTGTTTTAATTCACTATGTGTGCCCCTTCTTCATTAGCCTCCAGTGGAGCTGCGTTACCCTAGTGCTGTGGAGCCATCAAACTGTCTACTATCAATGGACAATTATTTAGTCTGTACAACTTCAAGAATGCCATCAGCGTAGACAAACAGCCATATATAAAGTAAGAACCAACAAAAGGGGATCACCACCTTGTTTTAACATCTATAAAAGAGACCATACTGTACAGAATGGTGAATGCTGTCCAAATTTGGCCAGTTATGCCCTGTACCATTACCATAGATATAGCAGTCCTCTCTGCTTAAATGTCAGAATGTATCAGGCAATTCTTTCCTCCTGTCAGAGCTTGGGTTAGTCAACAGTCAACAGTGCCTTATTATTTTGACGGCATTGGTTACGGTTTGGTTCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486611 lncRNA downstream 3431 66741070 ~ 66741457 (-) True G429572
TU486603 lncRNA downstream 6755 66729360 ~ 66738133 (-) True G429565
TU486601 lncRNA downstream 24351 66720321 ~ 66720537 (-) True G429563
TU486594 lncRNA downstream 35973 66708275 ~ 66708915 (-) True G429556
TU486503 lncRNA downstream 88505 66653328 ~ 66656383 (-) False LOC110524385
TU486631 lncRNA upstream 6273 66755125 ~ 66755342 (-) True G429588
TU486636 lncRNA upstream 12528 66761380 ~ 66761635 (-) True G429593
TU486642 lncRNA upstream 18841 66767693 ~ 66767896 (-) True G429599
TU486625 lncRNA upstream 36085 66784937 ~ 66785490 (-) True G429583
TU486621 lncRNA upstream 61161 66810013 ~ 66812758 (-) True G429580
XM_036978134.1 mRNA downstream 8139 66720762 ~ 66736749 (-) False LOC110524390
XR_002473580.2 mRNA downstream 8139 66720762 ~ 66736749 (-) False LOC110524390
XM_036978135.1 mRNA downstream 10807 66722259 ~ 66734081 (-) True LOC110524390
XM_036978132.1 mRNA downstream 68179 66666537 ~ 66676709 (-) True LOC110524389
XM_021603977.2 mRNA downstream 85750 66654491 ~ 66659138 (-) False LOC110524385
LOC118964717 mRNA upstream 3274 66752126 ~ 66764500 (-) True LOC118964717
XM_036978152.1 mRNA upstream 37985 66786837 ~ 66792056 (-) False LOC110524398
XM_036978155.1 mRNA upstream 37985 66786837 ~ 66792066 (-) False LOC110524398
XM_036978154.1 mRNA upstream 37985 66786837 ~ 66792136 (-) False LOC110524398
XM_021603995.2 mRNA upstream 37985 66786837 ~ 66792430 (-) False LOC110524398
TU484971 other downstream 1362298 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1733290 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1833890 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 2011916 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 2038863 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 38199 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1061753 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1062634 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1591352 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 1950969 68699821 ~ 68707448 (-) True G432310

Expression Profile