RNA id: TU486016


Basic Information

Item Value
RNA id TU486016
length 219
lncRNA type intronic
GC content 0.49
exon number 1
gene id G429028
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66753235 ~ 66753453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccatgttctgttataatcgccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttctggcttttctagggagtttttcctagccactgtgcatctacacctgcattgcttgctgtttggggttttaggctgggtttcagtacagcactttgagatatcagctgatgtacgaagggctttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485984 lncRNA upstream 45457 66707547 ~ 66707778 (+) True G429001
TU485975 lncRNA upstream 55236 66671245 ~ 66697999 (+) True G428992
TU485826 lncRNA upstream 95206 66656735 ~ 66658029 (+) True G428857
TU485896 lncRNA upstream 242971 66509902 ~ 66510264 (+) True G428922
TU485892 lncRNA upstream 246617 66506279 ~ 66506618 (+) True G428918
TU485818 lncRNA downstream 31484 66784937 ~ 66785516 (+) True LOC110524392
TU486059 lncRNA downstream 87244 66840697 ~ 66884634 (+) True rpp21
TU486092 lncRNA downstream 132730 66886183 ~ 66886424 (+) True G429102
TU486093 lncRNA downstream 134207 66887660 ~ 66887884 (+) True G429103
TU486825 lncRNA downstream 318338 67071791 ~ 67072079 (+) True G429767
XM_021603979.2 mRNA upstream 49092 66676828 ~ 66704143 (+) False osbpl1a
XM_036978130.1 mRNA upstream 49092 66676828 ~ 66704143 (+) False osbpl1a
XM_021603978.2 mRNA upstream 49092 66676829 ~ 66704143 (+) False osbpl1a
XM_036978131.1 mRNA upstream 49092 66681769 ~ 66704143 (+) True osbpl1a
XM_036978129.1 mRNA upstream 118963 66521798 ~ 66634272 (+) True LOC110524384
XM_036978138.1 mRNA downstream 15561 66769014 ~ 66776718 (+) False LOC110524391
XM_036978137.1 mRNA downstream 15563 66769016 ~ 66776718 (+) False LOC110524391
XM_021603985.2 mRNA downstream 15564 66769017 ~ 66776718 (+) False LOC110524391
XM_021603986.2 mRNA downstream 15564 66769017 ~ 66776718 (+) False LOC110524391
XM_021603983.2 mRNA downstream 15565 66769018 ~ 66776718 (+) False LOC110524391
TU485654 other upstream 610630 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 1231855 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1724533 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 228496 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 707276 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 707276 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1349726 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1459263 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile