RNA id: TU486625



Basic Information


Item Value
RNA id TU486625
length 554
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G429583
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66784937 ~ 66785490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATACACCAAGATTAGAACACAACTGGATACCTCTGGAACATCCCAGAAAAAAAAACCTGAATATATATTTCTAAGGAAACCCCACAGCCATAGATGTTAACAGTATTTTCAAAAGAAAACATAATGACCATTCTTCTTTTATGAAGAAAAACCCCTCCCTTCTCAGCATTGTTCAACGCTACACTAATCTCATCCCAGTGACCAGACAATATTTGTGAACAGCTCAAATGAGAATGAATGACTATACTGTACATTGAGATTTATAGCATTTTTTGTGTTAAGTCAGGTTATAGAAAGAACTGTATACAATCATAAGTAAGTAACTGTCTGAATATGTGTCTCTTTCATAGGGTGTCTGAAGTTTCATCGGCTTTAGTAGTAAGTGAGAGAGGATATACATTGATTCTCTTTCAAGGCACAACTTGTACAAAACATTTGAAGTGGGCAAAAATGTATGAAGTACAATTGAAGGGCTACAGGTTAAAAAAATGACCAAACATTATTGCACACTCAATTACTGATTCATCTTTCAGATCAATCATTGGGTTTTATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU486642 lncRNA downstream 17041 66767693 ~ 66767896 (-) True G429599
TU486636 lncRNA downstream 23302 66761380 ~ 66761635 (-) True G429593
TU486631 lncRNA downstream 29595 66755125 ~ 66755342 (-) True G429588
TU486613 lncRNA downstream 36085 66744888 ~ 66748852 (-) True G429574
TU486611 lncRNA downstream 43480 66741070 ~ 66741457 (-) True G429572
TU486621 lncRNA upstream 24523 66810013 ~ 66812758 (-) True G429580
TU486660 lncRNA upstream 52686 66838176 ~ 66839233 (-) True G429617
TU486664 lncRNA upstream 96552 66882042 ~ 66882304 (-) True G429620
TU486663 lncRNA upstream 98422 66883912 ~ 66884643 (-) True aqp12
TU486761 lncRNA upstream 193397 66978887 ~ 67057675 (-) True ankmy1
LOC118964717 mRNA downstream 20437 66752126 ~ 66764500 (-) True LOC118964717
XM_036978134.1 mRNA downstream 48188 66720762 ~ 66736749 (-) False LOC110524390
XR_002473580.2 mRNA downstream 48188 66720762 ~ 66736749 (-) False LOC110524390
XM_036978135.1 mRNA downstream 50856 66722259 ~ 66734081 (-) True LOC110524390
XM_036978132.1 mRNA downstream 108228 66666537 ~ 66676709 (-) True LOC110524389
XM_036978152.1 mRNA upstream 1347 66786837 ~ 66792056 (-) False LOC110524398
XM_036978155.1 mRNA upstream 1347 66786837 ~ 66792066 (-) False LOC110524398
XM_036978154.1 mRNA upstream 1347 66786837 ~ 66792136 (-) False LOC110524398
XM_021603995.2 mRNA upstream 1347 66786837 ~ 66792430 (-) False LOC110524398
XM_021603996.2 mRNA upstream 1347 66786837 ~ 66792938 (-) False LOC110524398
TU484971 other downstream 1402347 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1773339 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1873939 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 2051965 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 2078912 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 1561 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1025115 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1025996 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1554714 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 1914331 68699821 ~ 68707448 (-) True G432310

Expression Profile