RNA id: TU486660



Basic Information


Item Value
RNA id TU486660
length 1025
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G429617
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66838176 ~ 66839233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agGCAATTGTCAGATTGTTAGTAATccaaatagaaaaaaataaaacagtaaatatacATGGCCTTTTCTAGCCTATAAAAAAGGTACCCGGCCTGATATCCACTGTTTTCCGTCTAGTTAGGTACACAATATACACATGAAAAAGCACATTTTCAAGCTACATATACAATATAGCAAAACATTTTTATGAGAACAAAGAACGTTGGCCCAAGCAAGAATAAACCCTGTCATTCTTCCATTGATTTTGCCCATAAGGGTGCACATCTACTACCAAGGGACTAATGACACAGGAGGGAAATGATGGTAGCACTGGCAAATAAGGCAACCCTATATCGTCATCCATATCACCATATTCACTGTAATAATGGGAATGTTTTGAAATGTCTGTCCTATAACAAATGAGAAAAGACCAAAGATTAAATGTGGCACCATGTGGGAATAACAGTTTCATTAAGTGAGAGGCCCTTAACGTGATCATAGTGGGGACACAAATTAAATTCAAGTATCAAAATGCCTAAGAGGACACTATAACAAGCTGGATTGGGAAaattacaaagaaaaaaacaattatGGGAAAATAATTTGACACAATCAACAATACATTAGGCAAtgttttgcatttgtttaagGCAGTAATATTTCTTCCAAAAAGTAAGAACTAGATATCTTAATTCcatgttaaatatatatatatattttttcttcttgTACAAAATAACTAAGCCTGGATCTGAAAATAAGATGGATCTTCAAACGTTTGAGTGAGAATCAAAGAGTTCATATGGTCAGCGATGGGTTGTGCTCTGGATGTTTTTGGTCTTCTTCACAGTGAGGTTTGTCAGGGCTTATCAGGCTGGAGCATATAGAGTTGGGTTGTCAATCAGTCTATTGTCTGGCACAAAACCTCAAATCTGGCACAGCATGGGAAGGCATGGTTGTTTGTTCAGTTAATGGTTGCCTTTCATGGCCTCTTTAGCAGCCAAGATGAGAGGTGTAAGACTGGAGAGGGGCTTTGCCAGTTTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU486621 lncRNA downstream 25418 66810013 ~ 66812758 (-) True G429580
TU486625 lncRNA downstream 52686 66784937 ~ 66785490 (-) True G429583
TU486642 lncRNA downstream 70280 66767693 ~ 66767896 (-) True G429599
TU486636 lncRNA downstream 76541 66761380 ~ 66761635 (-) True G429593
TU486631 lncRNA downstream 82834 66755125 ~ 66755342 (-) True G429588
TU486664 lncRNA upstream 42809 66882042 ~ 66882304 (-) True G429620
TU486663 lncRNA upstream 44679 66883912 ~ 66884643 (-) True aqp12
TU486761 lncRNA upstream 139654 66978887 ~ 67057675 (-) True ankmy1
TU487326 lncRNA upstream 572664 67411897 ~ 67412183 (-) True G430255
TU487332 lncRNA upstream 578496 67417729 ~ 67418525 (-) True G430261
XM_021603994.2 mRNA downstream 36452 66799628 ~ 66801724 (-) True cep19
XM_036978153.1 mRNA downstream 44181 66786837 ~ 66793995 (-) False LOC110524398
XM_021603996.2 mRNA downstream 45238 66786837 ~ 66792938 (-) False LOC110524398
XM_021603995.2 mRNA downstream 45746 66786837 ~ 66792430 (-) False LOC110524398
XM_036978154.1 mRNA downstream 46040 66786837 ~ 66792136 (-) False LOC110524398
XM_021603999.2 mRNA upstream 44456 66883689 ~ 66885402 (-) False aqp12
XM_021604002.2 mRNA upstream 216426 67055659 ~ 67068645 (-) False ankmy1
XM_021604007.2 mRNA upstream 672219 67511452 ~ 67513336 (-) False LOC118936331
XM_036978164.1 mRNA upstream 672219 67511452 ~ 67513347 (-) True LOC118936331
XM_036978165.1 mRNA upstream 971362 67810595 ~ 67911677 (-) False lrrc7
TU486620 other downstream 48340 66787051 ~ 66789836 (-) True LOC110524398
TU484971 other downstream 1455586 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1826578 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1927178 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 2105204 64725927 ~ 64732972 (-) True LOC110524330
TU488974 other upstream 971372 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 972253 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1500971 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 1860588 68699821 ~ 68707448 (-) True G432310
TU489614 other upstream 1910984 68750217 ~ 68755057 (-) True G432338

Expression Profile