RNA id: TU489185



Basic Information


Item Value
RNA id TU489185
length 218
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G431926
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68114778 ~ 68114995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgcctaccgtctgtaagctgttagtgtcttaacgaccgttccacaggtgcatgttcattcattgtttatggttcattgaacaagcatgggagacagtgtttaaaccttttacaatgaagatctgtgaagttttgggatttttacgaattatccttgaaagacaaggtcctgaaaaaggaacttttttgtttgtttgtttagttgCACTGTCTGTACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU489172 lncRNA downstream 22112 68092467 ~ 68092666 (-) True G431913
TU489171 lncRNA downstream 22396 68092177 ~ 68092382 (-) True G431912
TU489169 lncRNA downstream 24267 68090217 ~ 68090511 (-) True G431910
TU489161 lncRNA downstream 30775 68083791 ~ 68084003 (-) True G431902
TU489155 lncRNA downstream 35838 68078665 ~ 68078940 (-) True G431896
TU489190 lncRNA upstream 7105 68122100 ~ 68122323 (-) True G431931
TU489203 lncRNA upstream 24058 68139053 ~ 68139422 (-) True G431944
TU489217 lncRNA upstream 41936 68156931 ~ 68157131 (-) True G431958
TU489221 lncRNA upstream 46849 68161844 ~ 68162053 (-) True G431962
TU489222 lncRNA upstream 47240 68162235 ~ 68162480 (-) True G431963
XM_021604019.2 mRNA downstream 542 68052908 ~ 68114236 (-) False LOC110524417
XM_021604020.2 mRNA downstream 29651 68052908 ~ 68085127 (-) False LOC110524417
XM_021604015.2 mRNA downstream 105184 68002085 ~ 68009594 (-) False si:ch211-198n5.11
XM_021604017.2 mRNA downstream 105184 68002085 ~ 68009594 (-) False si:ch211-198n5.11
XM_021604018.2 mRNA downstream 105184 68002085 ~ 68009594 (-) True si:ch211-198n5.11
XM_021604024.2 mRNA upstream 69231 68184226 ~ 68190916 (-) True slc5a9
XM_021604029.2 mRNA upstream 100005 68215000 ~ 68231509 (-) True spata6
XM_021604030.2 mRNA upstream 119126 68234121 ~ 68643132 (-) True agbl4
XM_021604033.2 mRNA upstream 216876 68331871 ~ 68352828 (-) False bend5
XM_021604035.2 mRNA upstream 700967 68815962 ~ 68819009 (-) True LOC110524428
TU488969 other downstream 296654 67811486 ~ 67818124 (-) True lrrc7
TU488974 other downstream 298234 67810605 ~ 67816544 (-) False lrrc7
TU486620 other downstream 1324942 66787051 ~ 66789836 (-) True LOC110524398
TU484971 other downstream 2732188 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 3103180 64999708 ~ 65011598 (-) False G427902
TU489232 other upstream 225209 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 584826 68699821 ~ 68707448 (-) True G432310
TU489614 other upstream 635222 68750217 ~ 68755057 (-) True G432338
TU489837 other upstream 889624 69004619 ~ 69006106 (-) True G432513
TU491077 other upstream 1407819 69522814 ~ 69524790 (-) True G433683

Expression Profile