RNA id: TU489614


Basic Information

Item Value
RNA id TU489614
length 1481
RNA type TUCP
GC content 0.32
exon number 4
gene id G432338
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68748558 ~ 68755057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTACTAACTATACacatcatggtgttactaactatatacatcatggtgttacttactatatacatcatggtgttactaactatatacatcATGGGGTGACTTACTACATACATCGTGGTGTtactaactatatacatcattgtgttactaacaatatacatcatggtgttactatctatatacatcatggtgttactaacaatatacatcatggtgttactaacaatatacatcatggtgttactaactatatacatcatggtgttactaactatatacatcatggtgttactaacaatatacatcatggtgttactatctatatacatcatggtgttactaacAATATGCATCACGGTGTtactaactatatacatcatggtgtttctaaatgtatacatcatggtgttactaactatatacatcatggtgttactaactatatacatcatggtgttactaacaatatacatcatggtgttactatctatatacatcatggtgttactaacaatatacatcatggtgttactaactATATACATTCGGTTTTACTAACAATATGCATCACGGTGTtactaactatatacatcatggtgttTCTAACTGtatacatcatggtgttactaactatatacatcatGCTGTTACTAACTATTtacatcatggtgttactaactatacacatcatggtgttactaacaatatacatcatggtgttactaactATATACATCACGGTGCtactaactatatacatcatggtgttaATAACAATATGcatcatggtgttactaactatacacatcatggtgttactaaaaatatacatcatggtgttactaactatatacatcatggtgttactaactatatacatcatggtgcttctaactatatacatcatggtgttTCAACTACACACAATGTGGTGCTACTAACTACACACATCATGCTTCTACTGACTACAAACATAGTGCTGCtactaactatatacatcatggttgttactaactatatacatcatggtgttaTTAACTATATACATCACGGTGTTACTAACAATATGcatcatGTTGCTACTAACTACACACATTATGGTGCTACTATCTATGtacatcatggtgttactaactatatacatcatggtgctactaactatatacatcatggCGCTACTAACTACACACATTGTGGTGTTACTAGCTATATATATCATGGTGTTAAtaactatatacatcatggtgttactaaccatatacatcatggtgttactaactATATGCATCATGGTGTTTCTAACTACATACGTTGTGGTGTtactaactatatacatcatggtgttactaactATATGCATCACGGTGTTACTAACAACATGCATCACGGTGTTACTAACTATATGcatcatggtgttactaactatatacatcatggtgttattaactatgtacatcatggtgttactaactatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489617 lncRNA downstream 1234 68748558 ~ 68748983 (-) False G432338
TU489349 lncRNA downstream 366455 68345154 ~ 68383762 (-) True G432084
TU489227 lncRNA downstream 581142 68168805 ~ 68169075 (-) True G431968
TU489226 lncRNA downstream 581550 68168428 ~ 68168667 (-) True G431967
TU489222 lncRNA downstream 587737 68162235 ~ 68162480 (-) True G431963
TU489659 lncRNA upstream 50957 68806014 ~ 68806320 (-) True G432377
TU489688 lncRNA upstream 71917 68826974 ~ 68827650 (-) True G432389
TU489754 lncRNA upstream 295776 69050833 ~ 69053884 (-) True LOC110522990
TU489772 lncRNA upstream 392573 69147630 ~ 69149826 (-) True G432448
TU489745 lncRNA upstream 427867 69182924 ~ 69186959 (-) True LOC110524437
XM_021604030.2 mRNA downstream 107085 68234121 ~ 68643132 (-) True agbl4
XM_021604033.2 mRNA downstream 397389 68331871 ~ 68352828 (-) False bend5
XM_021604029.2 mRNA downstream 518708 68215000 ~ 68231509 (-) True spata6
XM_021604024.2 mRNA downstream 559301 68184226 ~ 68190916 (-) True slc5a9
XM_021604019.2 mRNA downstream 635981 68052908 ~ 68114236 (-) False LOC110524417
XM_021604035.2 mRNA upstream 60905 68815962 ~ 68819009 (-) True LOC110524428
XM_021604036.2 mRNA upstream 75358 68830415 ~ 68911632 (-) True faf1
XM_021604042.2 mRNA upstream 189874 68944931 ~ 68978449 (-) True rnf11b
XM_036978199.1 mRNA upstream 223960 68979017 ~ 69020554 (-) False ttc39a
XM_036978194.1 mRNA upstream 223960 68979017 ~ 69023944 (-) False ttc39a
TU489586 other downstream 42769 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 397472 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 932093 67811486 ~ 67818124 (-) True lrrc7
TU488974 other downstream 933673 67810605 ~ 67816544 (-) False lrrc7
TU486620 other downstream 1960381 66787051 ~ 66789836 (-) True LOC110524398
TU489837 other upstream 249562 69004619 ~ 69006106 (-) True G432513
TU491077 other upstream 767757 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 2235835 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 2312968 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 2474125 71229182 ~ 71230589 (-) True LOC110524478

Expression Profile