RNA id: TU489837


Basic Information

Item Value
RNA id TU489837
length 1429
RNA type TUCP
GC content 0.43
exon number 2
gene id G432513
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69004619 ~ 69006106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtaataatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgtaccaggctgggaagactgaatctgcaaaaggtaagcagcttggtttgaagaaatcaactgtgggagcaattgctaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccccgtggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacaagggggacctagtgaatgacctgcagagagctgggaccaaagttacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtatatgtccaggcccctctgaagttttctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatatacccttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctttggggctgtttttctgcaaatggaccaggacgactaatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagctaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgattccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtctgtgttgcccagcaacagccccaaaacatcactgctctaggggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtattgagtattgagataaacttttgttattgaccaaatacttattttccaccatcatttgcaaatacatttattacaaatcctacaatgtgattttctggattttttttttctcattttgtctgccatagttgaagtgtacctatgatgaaaattacaggcctctctcatctttttaagtgggagaacgtgcacaattggtggttgactaaatacttttttgccccactgtaccttggAACAACTTTCAAAATGTTTATTCATAaaccgtaccagtcaaaagtttggacacacctgctcattcaaggttttttctttatttgtactattttctgcattgtagaataatagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489688 lncRNA downstream 176969 68826974 ~ 68827650 (-) True G432389
TU489659 lncRNA downstream 198299 68806014 ~ 68806320 (-) True G432377
TU489617 lncRNA downstream 255636 68748558 ~ 68748983 (-) False G432338
TU489349 lncRNA downstream 620857 68345154 ~ 68383762 (-) True G432084
TU489227 lncRNA downstream 835544 68168805 ~ 68169075 (-) True G431968
TU489754 lncRNA upstream 44727 69050833 ~ 69053884 (-) True LOC110522990
TU489772 lncRNA upstream 141524 69147630 ~ 69149826 (-) True G432448
TU489745 lncRNA upstream 176818 69182924 ~ 69186959 (-) True LOC110524437
TU491062 lncRNA upstream 462937 69469043 ~ 69469372 (-) True G433669
TU491063 lncRNA upstream 463658 69469764 ~ 69470321 (-) True G433670
XM_021604042.2 mRNA downstream 26170 68944931 ~ 68978449 (-) True rnf11b
XM_021604036.2 mRNA downstream 92987 68830415 ~ 68911632 (-) True faf1
XM_021604035.2 mRNA downstream 185610 68815962 ~ 68819009 (-) True LOC110524428
XM_021604030.2 mRNA downstream 361487 68234121 ~ 68643132 (-) True agbl4
XM_021604033.2 mRNA downstream 651791 68331871 ~ 68352828 (-) False bend5
XM_021604045.2 mRNA upstream 19815 69025921 ~ 69049989 (-) False eps15
XM_021604043.2 mRNA upstream 19815 69025921 ~ 69049990 (-) False eps15
XM_036978202.1 mRNA upstream 19815 69025921 ~ 69049990 (-) False eps15
XM_036978200.1 mRNA upstream 19815 69025921 ~ 69049991 (-) False eps15
XM_036978201.1 mRNA upstream 19815 69025921 ~ 69049991 (-) False eps15
TU489614 other downstream 249562 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 297171 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 651874 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1186495 67811486 ~ 67818124 (-) True lrrc7
TU488974 other downstream 1188075 67810605 ~ 67816544 (-) False lrrc7
TU491077 other upstream 516708 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 1984786 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 2061919 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 2223076 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 2280284 71286390 ~ 71286992 (-) True il23r

Expression Profile