RNA id: TU491063


Basic Information

Item Value
RNA id TU491063
length 558
lncRNA type antisense_over
GC content 0.64
exon number 1
gene id G433670
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69469764 ~ 69470321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCACTTTGCGCACTTTAGCTGTGGGTGCGGTGGTTTTCTCCACAGCTCCAGCGATGCCCACTGTCTGATCCAGGTACCCCAGCAACCCGTCTCTCTCTGCAGCCTCCTCCAGGTGCTCTCTCTGCCTGCGGATCCGCTCCTTCAGCTTCTCCAGCTTGTCATCCGGCTGCCTTCGCCTTAAGTTTTCCAGCCGCTGGGAGGCTGAGCCAGGACTGGAGGACGAAGAGTTCTCTGCTGAGGGTGGTGCCAGGCACTCCAGGGTGTGTGCTTTGGGCCTGTCCTCCGGGCCCTCCTCCCTGTGAGGGTCTCTGGCTGCAGTAGCGTGGCTTGGGGGACGCAGGGTGTCCAGCGCGGGCCGGTCGTTGAGGTAGCGCACCACGGTGCTGTCCAGAGCAGACGAGTGTGTGCTGTCCAGGTCTCGGCGGGTTTGCTGGTCTCGGGTGTCGCTCTGGTAGACCAGCTGGCTGAGACGGAAGTCCGGGGGAGGGGGGTTAGCCACCTCCGACTGCAGACTGTGGGCCTCCAGCTGGGAGGAGGTCAGGGGTGGTGGAGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491062 lncRNA downstream 392 69469043 ~ 69469372 (-) True G433669
TU489745 lncRNA downstream 282805 69182924 ~ 69186959 (-) True LOC110524437
TU489772 lncRNA downstream 319938 69147630 ~ 69149826 (-) True G432448
TU489754 lncRNA downstream 415880 69050833 ~ 69053884 (-) True LOC110522990
TU489688 lncRNA downstream 642114 68826974 ~ 68827650 (-) True G432389
TU491074 lncRNA upstream 14016 69484337 ~ 69484789 (-) True G433680
TU491076 lncRNA upstream 15873 69486194 ~ 69486404 (-) True G433682
TU491078 lncRNA upstream 16085 69486406 ~ 69524790 (-) False G433683
TU491083 lncRNA upstream 19129 69489450 ~ 69489758 (-) True G433688
TU491098 lncRNA upstream 32193 69502514 ~ 69504926 (-) True G433697
XM_036978235.1 mRNA downstream 119213 69239531 ~ 69350551 (-) True LOC110524442
XM_036978234.1 mRNA downstream 119214 69239531 ~ 69350550 (-) False LOC110524442
XM_036978237.1 mRNA downstream 119214 69239531 ~ 69350550 (-) False LOC110524442
XM_036978236.1 mRNA downstream 119215 69239531 ~ 69350549 (-) False LOC110524442
XM_036978245.1 mRNA upstream 81482 69551803 ~ 69619075 (-) True LOC110524447
XM_021604088.2 mRNA upstream 234550 69704871 ~ 69714329 (-) False LOC110524449
XM_021604087.2 mRNA upstream 234550 69704871 ~ 69714330 (-) True LOC110524449
XM_021604089.2 mRNA upstream 244961 69715282 ~ 69728407 (-) False LOC110524450
XM_021604090.2 mRNA upstream 244961 69715282 ~ 69728426 (-) True LOC110524450
TU489837 other downstream 463658 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 714707 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 762316 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1117019 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1651640 67811486 ~ 67818124 (-) True lrrc7
TU491077 other upstream 52493 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 1520571 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1597704 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1758861 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1816069 71286390 ~ 71286992 (-) True il23r

Expression Profile