RNA id: TU491078


Basic Information

Item Value
RNA id TU491078
length 1037
lncRNA type read_through
GC content 0.43
exon number 2
gene id G433683
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69486406 ~ 69524790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGACCAGTAAGCCTAATGTAACGGACACCAGCTAAAACCCCAATCCTGCTTATTTTGTACCCTGTGAACAAGTGCTGCTCTACAACACTTCTTTAATGTCTAAACTCTATTGTGCAAAGCTAATTGGGACATATAAGATGCACTAGCCAATCAGACAATAGCATGGTATGGCCAGTCACAACATAGACCACTTTGGAACAGAATGTGTGAACCATAGAAttacattttttacaattttacctttatttaactaggcaagtcagttaagaacaaattcatattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcggggatttgaacttgcaaccttccggttagtagtccaacgctctaaccactagaataagAACTAATTCTATAGTGTGAACAATATACAACATTaatctgaccacacacacacacacacacacacacacacacacacacacacagttcagttcGTGAATCACACTACACGGTCTACACACGTCTAATAAAATAGCTCTCATCTCACAACAAATGCAGTGAAGTTAGATTGCGTTCTATAAATATTAAAGGTGTTTTGCAAATATGAAGCCCTCCTTGAGAGTATCAACAATCTACCAAGTTGGGGCATGGTTCTAACTCTAGGTGATTCCTTTCTGTATTCTGCAGAGTTGCTCGTTCTAAATGCCagtggtgtgtgtacagtaccctGGCTGCTTTCTGCCGTGTCTCCTCCAGCTGACGTTGGGTCTCCAGTGCCTCCTGCTCTGCCTTTACCTTCAGCTCATAAAGGTCACGCTCGTGCCGCTGCTGCTGCGCCTGAAAGgttagaggtcaaaggtcaggacCTATGGCAAAAAGGCGAATGAAAACTACCAGAACATAACGAACACGCCAAAAGTGCTGAAGGTAATGTTTCAAAAGTGCAGCAGCACTATACTAAGCATCTAAACATATTGTTAGCAATCTTCAGGTGTTCTGATTGGTGGGTTAGCATCTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491076 lncRNA downstream 2 69486194 ~ 69486404 (-) True G433682
TU491074 lncRNA downstream 1617 69484337 ~ 69484789 (-) True G433680
TU491063 lncRNA downstream 16085 69469764 ~ 69470321 (-) True G433670
TU491062 lncRNA downstream 17034 69469043 ~ 69469372 (-) True G433669
TU489745 lncRNA downstream 299447 69182924 ~ 69186959 (-) True LOC110524437
TU491134 lncRNA upstream 30229 69555019 ~ 69556491 (-) True G433725
TU491147 lncRNA upstream 131219 69656009 ~ 69703291 (-) False G433735
TU491146 lncRNA upstream 174246 69699036 ~ 69703291 (-) True G433735
TU491232 lncRNA upstream 204765 69729555 ~ 69729792 (-) True G433814
TU491236 lncRNA upstream 208165 69732955 ~ 69733165 (-) True G433818
XM_036978235.1 mRNA downstream 135855 69239531 ~ 69350551 (-) True LOC110524442
XM_036978234.1 mRNA downstream 135856 69239531 ~ 69350550 (-) False LOC110524442
XM_036978237.1 mRNA downstream 135856 69239531 ~ 69350550 (-) False LOC110524442
XM_036978236.1 mRNA downstream 135857 69239531 ~ 69350549 (-) False LOC110524442
XM_036978245.1 mRNA upstream 27013 69551803 ~ 69619075 (-) True LOC110524447
XM_021604088.2 mRNA upstream 180081 69704871 ~ 69714329 (-) False LOC110524449
XM_021604087.2 mRNA upstream 180081 69704871 ~ 69714330 (-) True LOC110524449
XM_021604089.2 mRNA upstream 190492 69715282 ~ 69728407 (-) False LOC110524450
XM_021604090.2 mRNA upstream 190492 69715282 ~ 69728426 (-) True LOC110524450
TU489837 other downstream 480300 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 731349 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 778958 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1133661 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1668282 67811486 ~ 67818124 (-) True lrrc7
TU492773 other upstream 1466102 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1543235 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1704392 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1761600 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 2516172 72040962 ~ 72121697 (-) True G436172

Expression Profile