RNA id: TU491147


Basic Information

Item Value
RNA id TU491147
length 4153
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G433735
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69656009 ~ 69703291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGCCAGAGCCAGGGcgacagtttaaaaaaatatgcgTGGTTTATAAAACCCAGATGTGACAGGATCACCAAAGTGTATACAGAAATACAAATGAGACCATCGTTAAAACCATCATAGTACAGCGTTATACACTCAACATTTACAATCTACTCTGTAAAAGGGCTATTGTAAGACATTTCCTTTCTTGTCTTTTTAAAACACAACCACATAACTGATCTTTTTATCAGTTTTCATAACGTGTTTAAAGTACATCCATGTAGTTACTATAGACACCATTAGTCTTCTACTTTAGAAAGGGTACAACAACATCAAGTAGGAAGTAAATATGCAGAGACATCAAGCACATAACATGGGATTTAGCAAGCAGTAAAATCAGCAAATCATTGAGAGGTATTACTCATGAGAAAATGTGATGTCAGGGCTTGCGTATGATTCAGGTCTTAGAAAAAACCTATACAAAGTAACCCTCAATGTCAAAGGGTTATCACTTTCTGACCATATCTTGACATTAAAAAATGGCTCAGTTGTACATAAATTAGTGAATAACTGCTAAGCAGTCATATGCATTAGAATGCTTTCATCTTAGGAAACCATTAGTATCTTGTTAGTGTCATCACTCGCTTGACTGAGGGTTGTCAACCCCTAGTCCCCTCCCTCCAGTAGCCCTGGACGCAAACCCTGAGGATGAGGGAGCCAGGAAAAAATATGGAAACACCAACAAGATACAGCCAATCACAATCCAGGTTCACTTTCtactttttctcttttttttttttaacaaacacaattcaacaggTTTTACACTTAAAGAATGCAGGATTGTGAACAATCAAAATGCTCCTCAACACCTGGAATACTGCTTGTGCTAAAGCTAAATGAAAAACAATGTATGTAATCAAGGAAGAACAGTACAGCTAGAATAATCAGTATTCTCCAGATAATTAAAACAATCATTCAGATATGTACAATGGAAAACAAAAGCAGCATGCAGGCAAGACAATTGTCAGAGTGATACTTAAACAATCTCATGAAGGTGGGAGGGAGAAGTTTGTGGTCTCTGACAAAAGAGGACAGTGTTAACAGTGTTTTAGACTAGATTaaacagagagtgtgtgtatctgtgtgtgtgtttcggggGGTAGAAGAGCTCTCCATCACTTCAAAAGGACTGAAATGCCAAAGGTGACCTTGCAGCAGGGTGCTCTTTGGTGGAAAGACTGGTTGACTAGCCTGTTCCATATTTGTAGTGAGTGTGGAAAGAAAGTGGAAGCAACTGTTCTTCCAACAAAGAGGACACAATCAGTAGTTAGATCATTGAATTGTGTGTTTTGTGATAGTGGTTTCTATCACTAGCAGACTTCATTGCACAGCCATAATTGCCAAATGTCTAAGTGCATCATCACCACAGTCATGGAAGAAATCTATCTCAAAGGCACACGACATTGTGTGTATTTCTTGTTGTTGATGGTGCTATTACACATTTACAACATTTTGTAGCCTATGAACTTTGCAATTGAAACAAATATTTGGTGCTGGGACCCCAACTGTCATTTCTCATTAGACGCGTCAACAGTCTAAATAATAAAGAAAGGCTAAGAGAAAGGCAAGACAAGCTCATGCTGATTGATCGACACATCAACACTGTACATCAACTACTGCATTGTGTAAACACAGTTGAGCCCcggggtgacagagagaggctgTCACACACAGTGAGTGGGGAGAAAGcagtcaacaacacacacttATCCTTCCCTTGAAAAGCCACGAGGTCCACGATAAGGGGCTTTACCCGCTTCAAAGTTACAGCCGATAGATTCAGCTTGAAAATGATATAAGTAAAGCATGCATGTAACAAAATGAACAAACAAAAAGAGTGCTAACAATGGATGCCAGTTGAACCATTTCCATGGGGTTCTTTTTCTTGGCGAAACCAAGTAATAAAAAGTACCAATGTTAATCAAGGAACAACATATGTTAAAACAAAATCATGAGTTTTGTTGATGAGTGCATTGCCATAAAAGCATGAGAAACAGACATGTACTGTAGAATGAGTTGATAAATGATAAATCAACTTCACCTTCAACATCATTTTTGGGCACTGAGACTTGAAACTGTGAGCTAACCCAGTCCTAAACAACAGAGTAAATACTGCAGGCCCTACAACCCAAGGAGGACGGGCCTATTTAATCACGGCTATCTGATCTGAGAACTACTGTTCCACAGCATAGTCTTTCCAGGATTAAAGATCACTTGACACAGCAGGTATACGACTCGCTCACTTGGTCCCAGGCCTGACAAACCCTACCACCAAAAACCCTGGCACACGCAGAGTCCCAGGGCCTATGATACTGTACATGACGCATGCATTCTATATTCAAAAGAGGTGATGCAGTAGCTTTGTTGTAAAGTTCGTAGATATTTCAGAGGAAGAATGGCAGATCAGGGTGTGGACTGTTATTTGGATAGTGAAAGTGCTAGCAGACATGACAGATGAGGATCTCCTGTTTAGCCAGGGCATCCCTCCCATGGAAAACTCATCTCAACAGACGAAATCAATATCCTGTGAAGATGCCACATGATCTACTTGGCGGTATTACAGTCAGAGGAACCCCAGTGGAAAACCCTGATCACTGTCAGCTGATCTCGCTCCACTGCTTCTGAGAAAGTAGAACAACAGAGAAAATACAAAGTGCCCCACACAATCAGTAGAAAACACTGCAATCGAAAATGGTCACAGTGTTGTTTTAGTTGTTGAGCAATAAAAAGAGAGAATGGGATAGTATTCTTAAAAGGGTAGAGAAATGCACGAGACTCTCAGACATCTCAGTAGAACAAACAGACTATTCTTCTCAGGCTAGCTAGATGATTGATGCTACGCCAGTGAACAACATTCATTAAAATAACGCTTTAGCAGAAAAGCAAAGTACAGTTATGAACATGTAGGGCACTTGAACTAAGCCAATTAGATAATTGACTTGTTTGTTTTTGCAAAACTTTGAAGTTGTAACATGGGCTGGCTAACTGATCTGTGGGAAAAGTTTATATGAGAGGGAGAATGAGCCACCTGAAGTGTTCTTAGTCTTCTACGGAAACAGTAGCTTTTTAGAAAACATGGCACAAGTCTAATTCAACATTCCCACCATTGAGAAACACATACATATCATTGCACAGATGCTTGAGCTATTCTCATTCTTCTAAATAATACATGGAGTACATAATAGTGCACATGAACAAATATACAAAGCAACTTTCACAGACTAAAATATgtttaaattatatttttgtacaagttgtttttgtttgtttgtattaaATGCACTTTTCCTGCAAGTGCCGCCAGGGTTTTACACTGACTTTATTATTACAACTCAGTAAACAAAATCAACCCAGTAAGTGGAGTAGAAAAGGAAGCAACAGGTTGAAACCAGTTGATGTTGTTGATATGCTGTGGTAAATGTTGCGATCCAGAGTCCATGCTCAGgcttgttattattattagtctTTTTGATAAATATTTCTTCTCCCTGTTCATCCTAATATAATAAATGCATGTAAACAGTCGTTTGTTCTCTAATACATCTCCAAAAATGGCAAAGAACTACAAAAACAAATATACAAACAAAAAAGTATCAACATAAAGTCTGTTAAATTAAAGTACTCATAGGAAAATCCCAGTGCTTGGTGGGTTTTCCAAATATGTTCCTGTGTGTATCCCTCTTTGTCTGAAGAActcaaaactgtgtgtgtgtgtgtgtgtgtgtgtgtaatcccaTCTCATCTATACCAATATCATATACTGAGATTGTGCTTGAATAAATTAATCTGTTTGTGTGTCACTGAATTATTGTGTGTTTCTTTGTATGTCTATATGTAttagtgtgtatgtttgtgtctgCCTGCGTGTCTACCTGTGTCTGCCTGCGTGTCTACCTGTGTCTGCCTGCGTGTCTacctgtgtctgcctgtgtgtctacctgtgtctgCCTGCGTGTCTACCTGTGTCTGCCTGCGTGTCTACCTGTGTCtgcctgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagtcaccagatctcaacccaattgaacacttatgggagattctgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491134 lncRNA downstream 99518 69555019 ~ 69556491 (-) True G433725
TU491078 lncRNA downstream 131219 69486406 ~ 69524790 (-) False G433683
TU491098 lncRNA downstream 151083 69502514 ~ 69504926 (-) True G433697
TU491083 lncRNA downstream 166251 69489450 ~ 69489758 (-) True G433688
TU491076 lncRNA downstream 169605 69486194 ~ 69486404 (-) True G433682
TU491232 lncRNA upstream 26264 69729555 ~ 69729792 (-) True G433814
TU491236 lncRNA upstream 29664 69732955 ~ 69733165 (-) True G433818
TU491238 lncRNA upstream 33653 69736944 ~ 69737409 (-) True G433820
TU491318 lncRNA upstream 164042 69867333 ~ 69886159 (-) True G433889
TU491353 lncRNA upstream 194638 69897929 ~ 69899326 (-) True G433918
XM_036978245.1 mRNA downstream 36934 69551803 ~ 69619075 (-) True LOC110524447
XM_036978235.1 mRNA downstream 305458 69239531 ~ 69350551 (-) True LOC110524442
XM_036978234.1 mRNA downstream 305459 69239531 ~ 69350550 (-) False LOC110524442
XM_036978237.1 mRNA downstream 305459 69239531 ~ 69350550 (-) False LOC110524442
XM_036978236.1 mRNA downstream 305460 69239531 ~ 69350549 (-) False LOC110524442
XM_021604088.2 mRNA upstream 1580 69704871 ~ 69714329 (-) False LOC110524449
XM_021604087.2 mRNA upstream 1580 69704871 ~ 69714330 (-) True LOC110524449
XM_021604089.2 mRNA upstream 11991 69715282 ~ 69728407 (-) False LOC110524450
XM_021604090.2 mRNA upstream 11991 69715282 ~ 69728426 (-) True LOC110524450
XM_021604092.2 mRNA upstream 35072 69738363 ~ 69742378 (-) False LOC110524451
TU491077 other downstream 131219 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 649903 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 900952 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 948561 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1303264 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 1287601 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1364734 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1525891 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1583099 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 2337671 72040962 ~ 72121697 (-) True G436172

Expression Profile