RNA id: TU491232


Basic Information

Item Value
RNA id TU491232
length 238
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G433814
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69729555 ~ 69729792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTGGTAGTAGGGTGCATAATGACATCAACATTGTAACTCTCCGATGCAGAGGTTAAATATAATTGGAGCTTATTTATTCATCTTCCAAAAAAGAAGTAGTAAACCCACCTGTTCGACAGACACAATTATCCTTTCCATCGATGTCGTTATAGCCAAATACTCCAACACTGTCGTATGCACTGATTAAATACCCGTGTCTGGGAAGGGCTTGGTGTGTTTGACTAAAACCAGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491147 lncRNA downstream 26264 69656009 ~ 69703291 (-) False G433735
TU491146 lncRNA downstream 26264 69699036 ~ 69703291 (-) True G433735
TU491134 lncRNA downstream 173064 69555019 ~ 69556491 (-) True G433725
TU491078 lncRNA downstream 204765 69486406 ~ 69524790 (-) False G433683
TU491098 lncRNA downstream 224629 69502514 ~ 69504926 (-) True G433697
TU491236 lncRNA upstream 3163 69732955 ~ 69733165 (-) True G433818
TU491238 lncRNA upstream 7152 69736944 ~ 69737409 (-) True G433820
TU491318 lncRNA upstream 137541 69867333 ~ 69886159 (-) True G433889
TU491353 lncRNA upstream 168137 69897929 ~ 69899326 (-) True G433918
TU491376 lncRNA upstream 194869 69924661 ~ 69924861 (-) True G433938
XM_021604090.2 mRNA downstream 1129 69715282 ~ 69728426 (-) True LOC110524450
XM_021604089.2 mRNA downstream 1148 69715282 ~ 69728407 (-) False LOC110524450
XM_021604087.2 mRNA downstream 15225 69704871 ~ 69714330 (-) True LOC110524449
XM_021604088.2 mRNA downstream 15226 69704871 ~ 69714329 (-) False LOC110524449
XM_036978245.1 mRNA downstream 110480 69551803 ~ 69619075 (-) True LOC110524447
XM_021604092.2 mRNA upstream 8571 69738363 ~ 69742378 (-) False LOC110524451
XM_036978248.1 mRNA upstream 8571 69738363 ~ 69742378 (-) False LOC110524451
XM_036978247.1 mRNA upstream 8571 69738363 ~ 69742403 (-) False LOC110524451
XM_036978249.1 mRNA upstream 8571 69738363 ~ 69742403 (-) False LOC110524451
XM_021604091.2 mRNA upstream 8571 69738363 ~ 69743354 (-) True LOC110524451
TU491077 other downstream 204765 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 723449 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 974498 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 1022107 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1376810 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 1261100 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1338233 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1499390 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1556598 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 2311170 72040962 ~ 72121697 (-) True G436172

Expression Profile