RNA id: TU491483



Basic Information


Item Value
RNA id TU491483
length 809
lncRNA type antisense_over
GC content 0.59
exon number 1
gene id G434042
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70075248 ~ 70076056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCTCGCTCTGGTCCTGTACGTAAGAAGACACTATCTCCAGGTTGTTAGTGAACCACACAGGCAGCATGACGTCTGGCAGACGCCCCTCCACGATGGTCTGAGGGCAGACCGGGCCGAACTGCGTGGCGTTACGGACCTCCGGCCACGAGATGGGCGGCTCCGGGGGCTGGAAGCGCCTCTCGCCCGTGGGGGGTGCGGCATAAGGTACCCCCTGGAACTGAATGACGGGTCCCAGGATCTCGTTGTTGAGCTCCTTCTTGACGCCCCTCAGTTTGCCGTAGACGGTGGTGACCACAGGGTCTGTCTCGTCCAGTTTCTGAGAGGCCGTGACCGGGGCCTGCTGTGCTAGGCTCAGTATCCATAGCAGGAAGGTGAGGTCCAGGCCCAGACCCAGGCCTACGCCCAGCCGGGGCTGCATGACCCTCCAGGCAGGGTGCAGCCTCAGACGGCCAGGCCTCTGCaggggcatgctccctctgcCACACcagtagatacacacacacaccaactaggGCTCACCACACCGCAACGCTAGCAGCAACAATCCACTTTAGGTCCGCCCACAGAAAAGGGTACAATCAAAGGAAAAGTATGAGGCCTCCCAAACGTGCGGCTGTCAAAACTTTCAAAGGCTCTTTGCATGGCAAGTACTCCCCACTGATTTCACACTGGCGGAGGCAACATCTTCACTTGCTGCTATTCGTCAGACCGCATCCTATTGACAGTCCTGTTTTCCATCCTGGCGACGCAGGCAGGGCAGCCATTTGCAGCAGGTCTTCCACAGATAAATCAACCCCAGTCGAGGCGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU491482 lncRNA downstream 624 70074384 ~ 70074624 (-) True G434041
TU491474 lncRNA downstream 8989 70065871 ~ 70066259 (-) True G434033
TU491452 lncRNA downstream 40014 70034931 ~ 70035234 (-) True G434011
TU491378 lncRNA downstream 83471 69927144 ~ 69991777 (-) True G433940
TU491557 lncRNA upstream 92591 70168647 ~ 70168874 (-) True G434116
TU491559 lncRNA upstream 99752 70175808 ~ 70176156 (-) True G434118
TU491566 lncRNA upstream 114674 70190730 ~ 70190948 (-) True G434125
TU491567 lncRNA upstream 115245 70191301 ~ 70191501 (-) True G434126
TU491574 lncRNA upstream 126403 70202459 ~ 70202724 (-) True G434133
XM_036979053.1 mRNA downstream 70531 69950204 ~ 70004717 (-) False LOC110524459
XR_002473388.2 mRNA downstream 154154 69920157 ~ 69921094 (-) True LOC110522884
XM_021604111.2 mRNA downstream 241097 69825310 ~ 69834151 (-) True LOC110524457
XM_036978256.1 mRNA downstream 241395 69825310 ~ 69833853 (-) False LOC110524457
XM_021604097.2 mRNA downstream 323800 69744586 ~ 69751448 (-) True LOC110524454
XM_036978258.1 mRNA upstream 760759 70836815 ~ 70870377 (-) False LOC110524463
XM_021604131.2 mRNA upstream 760759 70836815 ~ 70870378 (-) False LOC110524463
XM_021604127.2 mRNA upstream 760759 70836815 ~ 70870397 (-) False LOC110524463
XM_021604129.2 mRNA upstream 760759 70836815 ~ 70870397 (-) True LOC110524463
XM_036978272.1 mRNA upstream 945616 71021672 ~ 71033161 (-) False LOC110524467
TU491077 other downstream 550458 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 1069142 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 1320191 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 1367800 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1722503 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 914836 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 991969 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1153126 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1210334 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 1964906 72040962 ~ 72121697 (-) True G436172

Expression Profile