RNA id: TU492757



Basic Information


Item Value
RNA id TU492757
length 443
lncRNA type intronic
GC content 0.42
exon number 1
gene id G435232
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70984908 ~ 70985350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGATGGCTACCCAGACtctttgcattgacccccttttttttgcactgactcttttgcactgactctatgcacactcactggactctacccacacactcacacatactacaatgacacacacacacactacatacacacactcacacagacaaacTTTCCCACTCTTTCCCGCTTTTCACATGCGCTACTCTGTTTATTGTCTATCCTGATTGActtgtcacttttacccctacctacatgtacatattacctcaactacctcgtactcctgcacaatgactcggtaccagtactccttgtatatagcctcgttattgttattttgtgttactatttccttttgttatttagcacatttttcttactttttaactctgcgttgttgggaaggggctcttaagtaagcatttcacggtgaagtctacacctgttctatttggcgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU492753 lncRNA downstream 2173 70982528 ~ 70982735 (-) True G435228
TU492739 lncRNA downstream 24332 70960300 ~ 70960576 (-) True G435214
TU492738 lncRNA downstream 24866 70959404 ~ 70960042 (-) True G435213
TU492734 lncRNA downstream 30929 70953717 ~ 70953979 (-) True G435209
TU492724 lncRNA downstream 46136 70938355 ~ 70938772 (-) True G435199
TU492762 lncRNA upstream 3724 70989074 ~ 70989966 (-) True G435233
TU492775 lncRNA upstream 8872 70994222 ~ 70994453 (-) True G435236
TU492776 lncRNA upstream 9244 70994594 ~ 70994848 (-) True G435237
TU492779 lncRNA upstream 13432 70998782 ~ 70999092 (-) True G435240
TU492782 lncRNA upstream 18327 71003677 ~ 71003948 (-) True G435243
XM_021604127.2 mRNA downstream 114511 70836815 ~ 70870397 (-) False LOC110524463
XM_021604129.2 mRNA downstream 114511 70836815 ~ 70870397 (-) True LOC110524463
XM_021604131.2 mRNA downstream 114530 70836815 ~ 70870378 (-) False LOC110524463
XM_036978258.1 mRNA downstream 114531 70836815 ~ 70870377 (-) False LOC110524463
XM_036979053.1 mRNA downstream 980191 69950204 ~ 70004717 (-) False LOC110524459
XM_036978272.1 mRNA upstream 36322 71021672 ~ 71033161 (-) False LOC110524467
XM_036978273.1 mRNA upstream 36322 71021672 ~ 71033577 (-) False LOC110524467
XM_036978274.1 mRNA upstream 37260 71022610 ~ 71033161 (-) False LOC110524467
XM_036978275.1 mRNA upstream 37317 71022667 ~ 71033161 (-) True LOC110524467
XM_021604145.2 mRNA upstream 60692 71046042 ~ 71056219 (-) False LOC110524468
TU491077 other downstream 1460118 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 1978802 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 2229851 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 2277460 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 2632163 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 5542 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 82675 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 243832 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 301040 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 1055612 72040962 ~ 72121697 (-) True G436172

Expression Profile