RNA id: TU492762


Basic Information

Item Value
RNA id TU492762
length 893
lncRNA type intronic
GC content 0.53
exon number 1
gene id G435233
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70989074 ~ 70989966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcacctccaccctacctgacaccctagacccactccaattttcttaccgccccaataggtccacagacgacacaatcgcaaccacactgcacactgcccactgaccctgggtctcgaccgcgccctgtgcaactgggtattggacttcctgacgggcagcccccaggtggtgagggtaggtaacaacatctccaccccactcatcctcaacactggggccccacaagggtgcgttctgagccctctcctgtactccctgttcactcacgactgcgtggccatgcacgcctccaactcaatcatcaagtttgccgacgacactacagtggtaggcttgattaccaacaatgacgaggcggcctacagggaggaggtgagtgccCTCGGAGTGGGGTGTCAggaaaagcactcacaaacttctacagatgcacaatcgagagcatcctgtcgggctgtatcaccgcctggtacggcaactgctccgcccacaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacacaacccgatgtcacagaaaggccaaaaagatcatcaaggacaacaaccacccgagccactgcctgttcaccccgctgtcatccagaaggcgaggtcagtacaggtgcatcaaagcagggacagagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacatactgactcaactccagctcactttaataatggaaattgatgacaaaatgtatcactagccacattaaacaatgccacttaatataatgtttacataccctacattactcatctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492757 lncRNA downstream 3724 70984908 ~ 70985350 (-) True G435232
TU492753 lncRNA downstream 6339 70982528 ~ 70982735 (-) True G435228
TU492739 lncRNA downstream 28498 70960300 ~ 70960576 (-) True G435214
TU492738 lncRNA downstream 29032 70959404 ~ 70960042 (-) True G435213
TU492734 lncRNA downstream 35095 70953717 ~ 70953979 (-) True G435209
TU492775 lncRNA upstream 4256 70994222 ~ 70994453 (-) True G435236
TU492776 lncRNA upstream 4628 70994594 ~ 70994848 (-) True G435237
TU492779 lncRNA upstream 8816 70998782 ~ 70999092 (-) True G435240
TU492782 lncRNA upstream 13711 71003677 ~ 71003948 (-) True G435243
TU492783 lncRNA upstream 14283 71004249 ~ 71004469 (-) True G435244
XM_021604127.2 mRNA downstream 118677 70836815 ~ 70870397 (-) False LOC110524463
XM_021604129.2 mRNA downstream 118677 70836815 ~ 70870397 (-) True LOC110524463
XM_021604131.2 mRNA downstream 118696 70836815 ~ 70870378 (-) False LOC110524463
XM_036978258.1 mRNA downstream 118697 70836815 ~ 70870377 (-) False LOC110524463
XM_036979053.1 mRNA downstream 984357 69950204 ~ 70004717 (-) False LOC110524459
XM_036978272.1 mRNA upstream 31706 71021672 ~ 71033161 (-) False LOC110524467
XM_036978273.1 mRNA upstream 31706 71021672 ~ 71033577 (-) False LOC110524467
XM_036978274.1 mRNA upstream 32644 71022610 ~ 71033161 (-) False LOC110524467
XM_036978275.1 mRNA upstream 32701 71022667 ~ 71033161 (-) True LOC110524467
XM_021604145.2 mRNA upstream 56076 71046042 ~ 71056219 (-) False LOC110524468
TU491077 other downstream 1464284 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 1982968 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 2234017 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 2281626 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 2636329 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 926 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 78059 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 239216 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 296424 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 1050996 72040962 ~ 72121697 (-) True G436172

Expression Profile