RNA id: TU492773



Basic Information


Item Value
RNA id TU492773
length 907
RNA type TUCP
GC content 0.45
exon number 1
gene id G435234
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70990892 ~ 70991798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCAGCCTTTTATAACCATGCAGTAGAAGTGTAGCCAGACTGagggcgccgacagagatggccgcctcgcttcgcgttcctaggaaactatgcagttttttgtttttttacgtgttatttcttacattagtaccccaggtcatcttaggtttcattacatacagtcgagaagaactactgaatataagatcagcatcaactcaccatcagtactaccaagaatatgtttttcgcgacgcggatcctgcgaccccaaaaaaaaaaaaactctgaaaaagagggaaacgaggcggtcttctggtcagactccggagacgggcacaccgtgcaccactccctagcattcttcttgccaatgtccagtctcttgacaacaaggttgatgaaatccgagcaagggtagcattccagagggacatcagagactgtaacgttctttgctcactggagagactctatccgaagcggtgcagccaacgggtttctccacgcatcgcgcagacagaaacaaacatctgcCTTAACAAGCGTATGcctatgactaacgtgacatggtgtgatgaaagaaacatacaggaactcaaatccttctgttcacctgatttagaattcctcacaatcaaatgtagaccgcattatctaccaagagaattctctttgattataatcacagccgtatatatccccccccaagcagacacatcgatggctctgaacgaactttatttaactctttgcaaacgggaaaccattcatccggaggctgcattcattgtagctggggattttaacaaggctaatctgaaaacaagactccctaaattttatcagcatatcgattgcgcaaccaggggtggaaagaccttggatcattgttactctaacttccgcgacgcatataaggccc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU492762 lncRNA downstream 926 70989074 ~ 70989966 (-) True G435233
TU492757 lncRNA downstream 5542 70984908 ~ 70985350 (-) True G435232
TU492753 lncRNA downstream 8157 70982528 ~ 70982735 (-) True G435228
TU492739 lncRNA downstream 30316 70960300 ~ 70960576 (-) True G435214
TU492738 lncRNA downstream 30850 70959404 ~ 70960042 (-) True G435213
TU492775 lncRNA upstream 2424 70994222 ~ 70994453 (-) True G435236
TU492776 lncRNA upstream 2796 70994594 ~ 70994848 (-) True G435237
TU492779 lncRNA upstream 6984 70998782 ~ 70999092 (-) True G435240
TU492782 lncRNA upstream 11879 71003677 ~ 71003948 (-) True G435243
TU492783 lncRNA upstream 12451 71004249 ~ 71004469 (-) True G435244
XM_021604127.2 mRNA downstream 120495 70836815 ~ 70870397 (-) False LOC110524463
XM_021604129.2 mRNA downstream 120495 70836815 ~ 70870397 (-) True LOC110524463
XM_021604131.2 mRNA downstream 120514 70836815 ~ 70870378 (-) False LOC110524463
XM_036978258.1 mRNA downstream 120515 70836815 ~ 70870377 (-) False LOC110524463
XM_036979053.1 mRNA downstream 986175 69950204 ~ 70004717 (-) False LOC110524459
XM_036978272.1 mRNA upstream 29874 71021672 ~ 71033161 (-) False LOC110524467
XM_036978273.1 mRNA upstream 29874 71021672 ~ 71033577 (-) False LOC110524467
XM_036978274.1 mRNA upstream 30812 71022610 ~ 71033161 (-) False LOC110524467
XM_036978275.1 mRNA upstream 30869 71022667 ~ 71033161 (-) True LOC110524467
XM_021604145.2 mRNA upstream 54244 71046042 ~ 71056219 (-) False LOC110524468
TU491077 other downstream 1466102 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 1984786 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 2235835 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 2283444 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 2638147 68340204 ~ 68352745 (-) True bend5
TU492700 other upstream 76227 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 237384 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 294592 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 1049164 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 1596486 72588284 ~ 72588576 (-) True G436830

Expression Profile


TU492773 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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TU492773 Expression in each Bioproject

Bar chart with 19 bars.
TU492773 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.