RNA id: TU492783



Basic Information


Item Value
RNA id TU492783
length 221
lncRNA type intronic
GC content 0.39
exon number 1
gene id G435244
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71004249 ~ 71004469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAATGGAATTAGGGTAACGGAATTATGGTAGCAGAATTATATAATGGGTctctgatctgtactacacagaaatgcataataaATCATTAGGGAGTGTTTATATAGTCTTGTTTCACTGTATGTACAAGTGGGTAACCTGTACTGAAATGGTGTgaaattgaaatgtattttttgcatGTTCCACTCCCCTCAAGActccctcggagagtggggtcacagcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU492782 lncRNA downstream 301 71003677 ~ 71003948 (-) True G435243
TU492779 lncRNA downstream 5157 70998782 ~ 70999092 (-) True G435240
TU492776 lncRNA downstream 9401 70994594 ~ 70994848 (-) True G435237
TU492775 lncRNA downstream 9796 70994222 ~ 70994453 (-) True G435236
TU492762 lncRNA downstream 14283 70989074 ~ 70989966 (-) True G435233
TU492787 lncRNA upstream 1765 71006234 ~ 71010603 (-) True G435246
TU492706 lncRNA upstream 12935 71017404 ~ 71019623 (-) True G435182
TU492701 lncRNA upstream 62071 71066540 ~ 71067820 (-) True G435177
TU492829 lncRNA upstream 108330 71112799 ~ 71114579 (-) True G435282
TU492827 lncRNA upstream 110803 71115272 ~ 71126065 (-) True G435280
XM_021604127.2 mRNA downstream 133852 70836815 ~ 70870397 (-) False LOC110524463
XM_021604129.2 mRNA downstream 133852 70836815 ~ 70870397 (-) True LOC110524463
XM_021604131.2 mRNA downstream 133871 70836815 ~ 70870378 (-) False LOC110524463
XM_036978258.1 mRNA downstream 133872 70836815 ~ 70870377 (-) False LOC110524463
XM_036979053.1 mRNA downstream 999532 69950204 ~ 70004717 (-) False LOC110524459
XM_036978272.1 mRNA upstream 17203 71021672 ~ 71033161 (-) False LOC110524467
XM_036978273.1 mRNA upstream 17203 71021672 ~ 71033577 (-) False LOC110524467
XM_036978274.1 mRNA upstream 18141 71022610 ~ 71033161 (-) False LOC110524467
XM_036978275.1 mRNA upstream 18198 71022667 ~ 71033161 (-) True LOC110524467
XM_021604145.2 mRNA upstream 41573 71046042 ~ 71056219 (-) False LOC110524468
TU492773 other downstream 12451 70990892 ~ 70991798 (-) True G435234
TU491077 other downstream 1479459 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 1998143 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 2249192 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 2296801 68699821 ~ 68707448 (-) True G432310
TU492700 other upstream 63556 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 224713 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 281921 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 1036493 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 1583815 72588284 ~ 72588576 (-) True G436830

Expression Profile