RNA id: TU492294


Basic Information

Item Value
RNA id TU492294
length 3583
lncRNA type antisense_over
GC content 0.43
exon number 5
gene id G434821
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71276849 ~ 71283974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTATTTTGTGTTTTGATAACCATCTGACAACCTTCATTGTGTTTTCCTAAGAACAAGGATGTGTCTCAGACATGACTAATATTTCCTggaaacaattattttttttacgttTTTGCGTCAAATAATACCCTGCCACCCAAAGTGACATATATCTCCAGACTGATGTGATCTGCATCCTGTAAGTCAGCAGACAGGACAAACACAGCATCATCAATTAGAATTAAGATGTGCCATTAAAAGGCTTCTCTGGCATGAGGTGCTTATCTGGGTTAAGTCAAATTCTTGGTATTCTAAAAGAGGTGATGGCATCTCCCAGAAATTATGGCAAAAACGAGGTGTCCACCTCCAAAAAGCAAACAATGTCTCATGTATTTCTCTCATGTATCACTCATGTATTTCACCGGAATAATGTCATCAAGATTAGTAGGTAGCTGCTCATCCTCATAATTACAAAATGGGGAGTTCAGAGTTTTATGTTTCGCCGTCCTATATGATACATGTTGACCTGTCATGCCTAATCTTGTTAAGTTTCAAAATGTGTGTCGTTGTTCAATGTTTTTCCATATCGTTCCATATCTTACTTTTTCTTCAATGAAAAATAAACTCCTCCCTTGATGATCaggaagtgagagagggggaattTTGGTTgcggcgcgcacacacacacacacacacacaccaacacaaataCGCACAGCAGTGGGCCATGTGGCTTACAGAGCAGATGAGTGATGACAGAGAAGGGAGGTGAGGTTATAGTGAGGCTACCACACTGTGACTATCTCTCCTACAGGGTGATGGTGTGGTTGATAGTGCTCAGAGGTGCAGAGACACTCTCAAAGACACTCTCAAAGACTGTCTCAATACTCCCGAGGGACATCCTTTTCTCATCTTCTACTTCTACATAAGTACTGGTTGTTAAAACAACACATGAAATGAAGAACAGTGTTTTTCACTGTAAATTAATGAAGTAATTTCACTGAATGAAGGAAGTGTTACCATATTTTGTCAGATGATAAATTATCCAGTACAGGTCAATTCTAAATGTGTGATACCAATCATTATACGATATGATCTTGCTTAGTATTGACCATGAGGAGACTTTGTTGTTCCTCTCAGTATGATGATGTTATGAGGTGTTTCCAGAAACACCTGAAATCTGCTGGCCTGGGATAAGATTAAACCTGAGATACACTTTTCACAATGCTCTATGTGAGTGTAGGTGTATGTGTAGGTATGGAGAGGGACAAGCTTATCTGACAACATCTCTGTGATACAACTCAGCGTAATACAAATCATACTCTGTGGCACACAACTGCACAATAACTTAGTCACAACCAACCAGTACAGTATGCCAAAGGGCATCATTAATAAAGTGACACATGTCAACTGAATCTGTTACTGATAGAGATGTATGATAAAACACCAGTTACCAGGCGTATGTAACTGTACATCCCTGGTTCTGctatagatgggttagctgaGAATGTCACGAAAACGATCCGCACACTTCAGTGGGACAGAaggatgtgtgttgttgtgattctgggtGACCgtatagctagcaacaatgacaagaaactgccatgtggggaatcttAAGTGGCTCGTTTGTTAGTTTTATCTTGTTCTGGATACCATGGATACCATGTCTTGTCACGTCTATGCTAATATTGCTCAAATTCTCTATGTATCTAGCCAGCAACTGTAAcgatgtacactgaacaaaaatatacacacagcatgtaaaatgtttgtcccatgtttcatgagctgaaataaaagatccaagaaatgttccatatgcacaaaaaagctTACTGCTCAAAAATAaattgcacaaatttgtttatatccctgttagtgagcatttctcctttgccaagataatccatccactttacaggtgtggcataccaagaagctgattaaacaacatgagcattacacaggttcaccttgtgctggggacaataaaaggccactccaaaatgtttagttttgtcacacagcacaatgccacagatgtctcaagtttggactttctgcaggaatgtccaccagagctgttgccagataattgaatgttaatttcactaccataagccacctccaaaatcgttttagagattttggcagtaagtccaaccggcctcacaaccgcagaccacgtgtaaccatgccaggacgtccacatccagcttcttcccctgcgggattgtctgagaccagccacttggacagctgatgaaactgagaagtatttatttctgtaataaggcccttttgtgggggaaaactcattctgattggctgggcctggctccaaagtaggtgggcctatgccctcccaggtccacccattgctgtgcccctgcccagtcgtgaaatccatagattaggtcctaataaatgtatttcaattgactgatttccttctatgaactgtaactcagtaaaattgttgaaattgttgcatgttgcatttatatttttgttcagtgtattttgtTAGACAACAAGTGCATGTTGTGAAACTTTATTCATGCTTTCAATAAACACTGGAGACGAAATATAGTtcacatgttgtcaacaatctaaaccaaccctgtctgttttgcccaATAGTTGCGCACATTCAgctttgttgctaaacaaccaacctgtcTATAAAGGCCATCTGCAGGACCAACAAATCACCCACACAGTGCAGTATTAGTGCACTTACCCTCCTCCTGTGTCCAGTTAGAGGCGGGTTGGCTCCAGTCACTCCAGATGCCTCTCCTATGGCTCAGTCTGACCCTGGCCTGGAACTCATACTTCGTGTAGGGCTGCAGAGACACAATGGACTGGTTCCACACTGAACCTGCGGTGTGTGGGTGTAATATCCATGGTCCTGGTCCCTGGGCGGTTCTCTGCTGGACCTCCAGGAGCTGAGCTCCCTGAGCCTCCTCCACCCTGACATTACAGCCCAGCGACCAGCACTCTACCTGGGACACATCAGGGGGCAAGGGCtgcaCAATGTGGTCGAGTGTGAAGTTGAGGGTGGTGGACACAGCAGAGCCCAGCTTGTTGGAGGAGCTGGCCCATACGGAGTATTCAGTCTGGGCAGAACCAGACACAGGGAAATTAGCTGAGACTAGACCAGGATCAGACCTGGAACCAGAACCAGGGTAGGATACAGATCCTGATGTGCTGTTACCAAACACAGCTCTCACCCAGAGCTCTGAAGTGGTTGTCAGGTGagtttcccttcctctcctccatgtacACATCACCTCTCCAACTGGACCTTTCTGGACACAGGTTACATTTTCTGGCAGGTCAGGTGTGTATCCAGTATCAATATCGAGTCCACAAGGCTCAGGTTCTCCTTCACACAGGCAGGTGTACGTTGTGTTTTTACTTATGTTTGTCACATTGAGGAATATAGTTGTAGAGTTGTAGGGCTGTATTTTCTGTGTTTTCTTCTTGTCGATGTGCATTGATTTGGAAGCTCTGCAGCTGGCCTGATAGGTACAGAACACCTGGAAGCTGGAGCCCAGAAGGACCAGGTCCCCAATGCTGGATGATGCAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492283 lncRNA upstream 22196 71254424 ~ 71254653 (+) True G434810
TU492270 lncRNA upstream 51232 71225288 ~ 71225617 (+) True G434797
TU492269 lncRNA upstream 52374 71224212 ~ 71224475 (+) True G434796
TU492264 lncRNA upstream 57124 71218789 ~ 71219725 (+) False G434792
TU492228 lncRNA upstream 70122 71167601 ~ 71206727 (+) True G434759
TU492296 lncRNA downstream 9005 71292979 ~ 71293262 (+) True G434823
TU492297 lncRNA downstream 10557 71294531 ~ 71294838 (+) True G434824
TU492298 lncRNA downstream 11247 71295221 ~ 71295452 (+) True G434825
TU492304 lncRNA downstream 15876 71299850 ~ 71300052 (+) True G434831
TU492305 lncRNA downstream 16754 71300728 ~ 71300939 (+) True G434832
XM_021604158.2 mRNA upstream 126749 71139770 ~ 71150100 (+) True LOC110524471
XM_036976509.1 mRNA upstream 146621 71107095 ~ 71130228 (+) False impact
XM_036976508.1 mRNA upstream 146621 71107097 ~ 71130228 (+) False impact
NM_001160535.2 mRNA upstream 146796 71107179 ~ 71130053 (+) True impact
XM_036978268.1 mRNA upstream 211691 71055573 ~ 71065158 (+) True LOC110524466
LOC110522992 mRNA downstream 25370 71309344 ~ 71324730 (+) True LOC110522992
XM_021604186.2 mRNA downstream 57528 71341502 ~ 71354918 (+) False si:dkey-183n20.15
XM_021604187.2 mRNA downstream 57528 71341502 ~ 71354918 (+) True si:dkey-183n20.15
XM_021601417.2 mRNA downstream 140397 71424371 ~ 71434943 (+) False LOC110522993
XM_021604195.2 mRNA downstream 156142 71440116 ~ 71442558 (+) True mmachc
TU492265 other upstream 53271 71218789 ~ 71223578 (+) True G434792
TU492109 other upstream 316917 70959610 ~ 70959932 (+) True G434653
TU488020 other upstream 3062745 68212716 ~ 68214104 (+) True LOC110524423
TU487928 other upstream 3173315 68103179 ~ 68103534 (+) True G430796
TU487402 other upstream 3812526 67460729 ~ 67464323 (+) True LOC110524407
TU492302 other downstream 14641 71298615 ~ 71298900 (+) True G434829
TU492480 other downstream 391897 71675871 ~ 71687169 (+) True ralgps2
TU494101 other downstream 1219486 72503460 ~ 72504435 (+) True G436403
TU494306 other downstream 1711525 72995499 ~ 72995735 (+) True G436588
TU495122 other downstream 2172327 73456301 ~ 73495084 (+) True G437327

Expression Profile