RNA id: TU493101


Basic Information

Item Value
RNA id TU493101
length 232
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G435510
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71517623 ~ 71517854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCGGTATGGAACTGTGTTTCAGCCTGGTTTATGGAGATAGGTTAGAGGTCACTGACCGGCAGTGCGAAGGTCACAGGCAAGCGCCAGCTCCAGACCCCCTCCTAGGGCGAAGCCATCCACCATGACAACCGTTGGCATGGGCAAAGTGGCTGTCATAGCAATGCAATGTCCATAGCAACGTAACACCCAGAGAGTAGAACACCATGTGTAGAGATCAGACAGATCTAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493100 lncRNA downstream 1327 71515283 ~ 71516296 (-) False G435509
TU493096 lncRNA downstream 1327 71515364 ~ 71516296 (-) True G435509
TU493098 lncRNA downstream 1430 71515283 ~ 71516193 (-) False G435509
TU493076 lncRNA downstream 4431 71512841 ~ 71513192 (-) True G435496
TU493011 lncRNA downstream 80394 71435046 ~ 71437229 (-) True LOC110524487
TU493102 lncRNA upstream 1413 71519267 ~ 71519786 (-) True G435511
TU493103 lncRNA upstream 2580 71520434 ~ 71520943 (-) True G435512
TU493104 lncRNA upstream 4055 71521909 ~ 71522155 (-) True G435513
TU493108 lncRNA upstream 9971 71527825 ~ 71528031 (-) True G435517
TU493195 lncRNA upstream 165059 71682913 ~ 71687158 (-) True G435602
XR_005051939.1 mRNA downstream 64362 71453146 ~ 71453261 (-) True LOC118964746
XM_021604191.2 mRNA downstream 77505 71435035 ~ 71440118 (-) False LOC110524487
XM_021604193.2 mRNA downstream 77505 71435035 ~ 71440118 (-) False LOC110524487
XM_021604194.2 mRNA downstream 77505 71435035 ~ 71440118 (-) False LOC110524487
XR_005051847.1 mRNA downstream 94114 71372725 ~ 71423509 (-) True ipo13
XM_021604200.2 mRNA upstream 14598 71532452 ~ 71542743 (-) True zyg11
XM_021604207.2 mRNA upstream 103319 71621173 ~ 71661028 (-) False angptl1a
XM_021604206.2 mRNA upstream 103319 71621173 ~ 71661464 (-) True angptl1a
XM_021604209.2 mRNA upstream 263827 71781681 ~ 71784311 (-) False faslg
XR_002473593.2 mRNA upstream 264108 71781962 ~ 71792919 (-) False faslg
TU492898 other downstream 230631 71286390 ~ 71286992 (-) True il23r
TU492901 other downstream 287034 71229182 ~ 71230589 (-) True LOC110524478
TU492700 other downstream 448736 71068025 ~ 71068887 (-) True G435176
TU492773 other downstream 525825 70990892 ~ 70991798 (-) True G435234
TU491077 other downstream 1992833 69522814 ~ 69524790 (-) True G433683
TU493828 other upstream 523108 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 1070430 72588284 ~ 72588576 (-) True G436830
TU494584 other upstream 1098442 72616296 ~ 72616944 (-) True G436842
TU494589 other upstream 1154300 72672154 ~ 72672826 (-) True G436847
TU494616 other upstream 1256707 72774561 ~ 72775868 (-) True G436873

Expression Profile