RNA id: TU493242


Basic Information

Item Value
RNA id TU493242
length 477
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G435640
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71730069 ~ 71740813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgcatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgGGtagttttgcacgcccaatttttcagtttttgatttgttaaaaaggtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493224 lncRNA downstream 3807 71726043 ~ 71726262 (-) True G435624
TU493208 lncRNA downstream 20406 71708032 ~ 71709663 (-) True G435610
TU493201 lncRNA downstream 33529 71695821 ~ 71696540 (-) True G435608
TU493199 lncRNA downstream 35935 71693934 ~ 71694134 (-) True G435606
TU493195 lncRNA downstream 42911 71682913 ~ 71687158 (-) True G435602
TU493464 lncRNA upstream 40886 71781699 ~ 71792898 (-) True faslg
TU493523 lncRNA upstream 130498 71871311 ~ 71871524 (-) True G435901
TU493623 lncRNA upstream 291576 72032389 ~ 72032606 (-) True G435997
TU493851 lncRNA upstream 343337 72084150 ~ 72084631 (-) True G436194
TU493858 lncRNA upstream 351904 72092717 ~ 72096564 (-) True G436199
XM_021604206.2 mRNA downstream 68605 71621173 ~ 71661464 (-) True angptl1a
XM_021604207.2 mRNA downstream 69041 71621173 ~ 71661028 (-) False angptl1a
XM_021604200.2 mRNA downstream 187326 71532452 ~ 71542743 (-) True zyg11
XR_005051939.1 mRNA downstream 276808 71453146 ~ 71453261 (-) True LOC118964746
XM_021604194.2 mRNA downstream 289951 71435035 ~ 71440118 (-) False LOC110524487
XM_021604209.2 mRNA upstream 40868 71781681 ~ 71784311 (-) False faslg
XR_002473593.2 mRNA upstream 41149 71781962 ~ 71792919 (-) False faslg
XM_036978293.1 mRNA upstream 76732 71817545 ~ 71826630 (-) False si:dkey-86e18.1
XM_036978292.1 mRNA upstream 76732 71817545 ~ 71826642 (-) False si:dkey-86e18.1
XM_021604212.2 mRNA upstream 76732 71817545 ~ 71827011 (-) False si:dkey-86e18.1
TU492898 other downstream 443077 71286390 ~ 71286992 (-) True il23r
TU492901 other downstream 499480 71229182 ~ 71230589 (-) True LOC110524478
TU492700 other downstream 661182 71068025 ~ 71068887 (-) True G435176
TU492773 other downstream 738271 70990892 ~ 70991798 (-) True G435234
TU491077 other downstream 2205279 69522814 ~ 69524790 (-) True G433683
TU493828 other upstream 300149 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 847471 72588284 ~ 72588576 (-) True G436830
TU494584 other upstream 875483 72616296 ~ 72616944 (-) True G436842
TU494589 other upstream 931341 72672154 ~ 72672826 (-) True G436847
TU494616 other upstream 1033748 72774561 ~ 72775868 (-) True G436873

Expression Profile