RNA id: TU494085


Basic Information

Item Value
RNA id TU494085
length 221
lncRNA type intronic
GC content 0.39
exon number 1
gene id G436391
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72484666 ~ 72484886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgaaaataagaatttgttcttaactgacttgcctggttaaaataaaggtaaaataaaaataaaaaaaaacagatccacagatgatgcagtctctattgcactccacactgccctttcccacctggacaaaaggaacatctatgtgagaatgctattccttgactacagctcagcgttcaacaccatagtgccctcaaagctcatcactaagctaaggacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494077 lncRNA upstream 7731 72476736 ~ 72476935 (+) True G436383
TU494067 lncRNA upstream 13548 72470915 ~ 72471118 (+) True G436375
TU494064 lncRNA upstream 17250 72467216 ~ 72467416 (+) True G436372
TU494060 lncRNA upstream 21349 72463081 ~ 72463317 (+) True G436368
TU493821 lncRNA upstream 27645 72456702 ~ 72457021 (+) True G436168
TU494086 lncRNA downstream 2182 72487068 ~ 72487278 (+) True G436392
TU494104 lncRNA downstream 30701 72515587 ~ 72515838 (+) True G436405
TU494105 lncRNA downstream 30979 72515865 ~ 72516088 (+) True G436406
TU494107 lncRNA downstream 33508 72518394 ~ 72518594 (+) True G436408
TU494108 lncRNA downstream 39692 72524578 ~ 72524811 (+) True G436409
XR_005051848.1 mRNA upstream 91216 72377782 ~ 72393450 (+) False LOC110524509
XM_036978313.1 mRNA downstream 245775 72730661 ~ 72830580 (+) False LOC110524511
XM_036978316.1 mRNA downstream 245775 72730661 ~ 72830580 (+) False LOC110524511
XM_036978315.1 mRNA downstream 245777 72730663 ~ 72830580 (+) False LOC110524511
XM_036978317.1 mRNA downstream 245777 72730663 ~ 72830580 (+) True LOC110524511
LOC110524512 mRNA downstream 344430 72829316 ~ 72830580 (+) True LOC110524512
TU492480 other upstream 797497 71675871 ~ 71687169 (+) True ralgps2
TU492302 other upstream 1185766 71298615 ~ 71298900 (+) True G434829
TU492265 other upstream 1261088 71218789 ~ 71223578 (+) True G434792
TU492109 other upstream 1524734 70959610 ~ 70959932 (+) True G434653
TU488020 other upstream 4270562 68212716 ~ 68214104 (+) True LOC110524423
TU494101 other downstream 18574 72503460 ~ 72504435 (+) True G436403
TU494306 other downstream 510613 72995499 ~ 72995735 (+) True G436588
TU495122 other downstream 971415 73456301 ~ 73495084 (+) True G437327
TU496738 other downstream 2278318 74763204 ~ 74770166 (+) True LOC110524560
TU496740 other downstream 2287123 74772009 ~ 74776469 (+) True G438719

Expression Profile