RNA id: TU494101


Basic Information

Item Value
RNA id TU494101
length 544
RNA type TUCP
GC content 0.42
exon number 2
gene id G436403
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72503460 ~ 72504435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accatgctcaaccatccgatcaacaagacactcttctttaagaagtacaccatgctcaaccatccgatcaacaagacactcttctttaagaagtacaccatgctcaaccatacgatctacaagacactcttctttaagaagtacgccatgctcaaccatccgatcaacaagacactcttctttaagaagtacgccatgcacaaccatccgatcaacaagacactcttctttaagaagtacaccatgctcagccagacgatctacaagacactcttctttaagaagtacaccatgctcaaccatccgatcaacaagacactcttctttaagaagtacaccatgctcaaccatccgatcaacaagacactcttctttaagaagtacaccatgctcaaccatacgatctacaagacactcttctttaagaagtacgccatgcttaaccatccgatcaacaagacactcttctttaagaagtacgccatgcacaaccatccgatcaacaagacactcttctttaagaagtacaccatgctcaaccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494086 lncRNA upstream 16182 72487068 ~ 72487278 (+) True G436392
TU494085 lncRNA upstream 18574 72484666 ~ 72484886 (+) True G436391
TU494077 lncRNA upstream 26525 72476736 ~ 72476935 (+) True G436383
TU494067 lncRNA upstream 32342 72470915 ~ 72471118 (+) True G436375
TU494064 lncRNA upstream 36044 72467216 ~ 72467416 (+) True G436372
TU494104 lncRNA downstream 11152 72515587 ~ 72515838 (+) True G436405
TU494105 lncRNA downstream 11430 72515865 ~ 72516088 (+) True G436406
TU494107 lncRNA downstream 13959 72518394 ~ 72518594 (+) True G436408
TU494108 lncRNA downstream 20143 72524578 ~ 72524811 (+) True G436409
TU494115 lncRNA downstream 42720 72547155 ~ 72547354 (+) True G436416
XR_005051848.1 mRNA upstream 110010 72377782 ~ 72393450 (+) False LOC110524509
XM_021604234.2 mRNA upstream 110010 72377783 ~ 72393450 (+) False LOC110524509
XM_036978310.1 mRNA upstream 110010 72377783 ~ 72393450 (+) False LOC110524509
XM_036978311.1 mRNA upstream 110010 72377783 ~ 72393450 (+) False LOC110524509
XM_036978312.1 mRNA upstream 110010 72377858 ~ 72393450 (+) True LOC110524509
XM_036978313.1 mRNA downstream 226226 72730661 ~ 72830580 (+) False LOC110524511
XM_036978316.1 mRNA downstream 226226 72730661 ~ 72830580 (+) False LOC110524511
XM_036978315.1 mRNA downstream 226228 72730663 ~ 72830580 (+) False LOC110524511
XM_036978317.1 mRNA downstream 226228 72730663 ~ 72830580 (+) True LOC110524511
LOC110524512 mRNA downstream 324881 72829316 ~ 72830580 (+) True LOC110524512
TU492480 other upstream 816291 71675871 ~ 71687169 (+) True ralgps2
TU492302 other upstream 1204560 71298615 ~ 71298900 (+) True G434829
TU492265 other upstream 1279882 71218789 ~ 71223578 (+) True G434792
TU492109 other upstream 1543528 70959610 ~ 70959932 (+) True G434653
TU488020 other upstream 4289356 68212716 ~ 68214104 (+) True LOC110524423
TU494306 other downstream 491064 72995499 ~ 72995735 (+) True G436588
TU495122 other downstream 951866 73456301 ~ 73495084 (+) True G437327
TU496738 other downstream 2258769 74763204 ~ 74770166 (+) True LOC110524560
TU496740 other downstream 2267574 74772009 ~ 74776469 (+) True G438719
TU497242 other downstream 2666869 75171304 ~ 75178287 (+) True LOC110524571

Expression Profile