RNA id: TU494104


Basic Information

Item Value
RNA id TU494104
length 252
lncRNA type intronic
GC content 0.46
exon number 1
gene id G436405
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72515587 ~ 72515838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtaagtcactgtgtcagtaacagaaccaacagtgggaacagctgtaagtctctgtgtcagtaacagaaccaacagtgggatctgtgtcagtaacagaaccaacagtgggattagctgtaagtctctgtgtcagtaacagaaccaacagtgggaacagctgtaagtctctgtgtcagtaacagaaccaacagtgggatctgtgtcagtaacagaaccaacagtgggatcagctgtaagtctctgtgtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494086 lncRNA upstream 28309 72487068 ~ 72487278 (+) True G436392
TU494085 lncRNA upstream 30701 72484666 ~ 72484886 (+) True G436391
TU494077 lncRNA upstream 38652 72476736 ~ 72476935 (+) True G436383
TU494067 lncRNA upstream 44469 72470915 ~ 72471118 (+) True G436375
TU494064 lncRNA upstream 48171 72467216 ~ 72467416 (+) True G436372
TU494105 lncRNA downstream 27 72515865 ~ 72516088 (+) True G436406
TU494107 lncRNA downstream 2556 72518394 ~ 72518594 (+) True G436408
TU494108 lncRNA downstream 8740 72524578 ~ 72524811 (+) True G436409
TU494115 lncRNA downstream 31317 72547155 ~ 72547354 (+) True G436416
TU494122 lncRNA downstream 39593 72555431 ~ 72555636 (+) True G436423
XR_005051848.1 mRNA upstream 122137 72377782 ~ 72393450 (+) False LOC110524509
XM_036978313.1 mRNA downstream 214823 72730661 ~ 72830580 (+) False LOC110524511
XM_036978316.1 mRNA downstream 214823 72730661 ~ 72830580 (+) False LOC110524511
XM_036978315.1 mRNA downstream 214825 72730663 ~ 72830580 (+) False LOC110524511
XM_036978317.1 mRNA downstream 214825 72730663 ~ 72830580 (+) True LOC110524511
LOC110524512 mRNA downstream 313478 72829316 ~ 72830580 (+) True LOC110524512
TU494101 other upstream 11152 72503460 ~ 72504435 (+) True G436403
TU492480 other upstream 828418 71675871 ~ 71687169 (+) True ralgps2
TU492302 other upstream 1216687 71298615 ~ 71298900 (+) True G434829
TU492265 other upstream 1292009 71218789 ~ 71223578 (+) True G434792
TU492109 other upstream 1555655 70959610 ~ 70959932 (+) True G434653
TU494306 other downstream 479661 72995499 ~ 72995735 (+) True G436588
TU495122 other downstream 940463 73456301 ~ 73495084 (+) True G437327
TU496738 other downstream 2247366 74763204 ~ 74770166 (+) True LOC110524560
TU496740 other downstream 2256171 74772009 ~ 74776469 (+) True G438719
TU497242 other downstream 2655466 75171304 ~ 75178287 (+) True LOC110524571

Expression Profile