RNA id: TU494593


Basic Information

Item Value
RNA id TU494593
length 595
lncRNA type intronic
GC content 0.49
exon number 1
gene id G436851
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72689789 ~ 72690383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagaaacatcttcaccggctcagagacagaaacatcttcactggcTTAGAGACAGAAatatcttcactagctcagagacagaaacatcttcaccagctcagagacagaaacatctccactagctcagagacagaaacatgtccaccagctcagagacagaaacatcttcaccagctcagagacagaaacatccccaccagctcagagacaataacatccccaccagctcagagagaaacatctccactagctcagagacagaaacatctccactacctcagagacagaaacatctccactagctcagagatggaaacatgtccacaagctctgtgacagaaacatccccaccagctcagagacagaaacatccccaccagctctgtgacagaaacatacccaccagctcagagacagaaacatccccaccagctctgtgacagaaacatccccaccagctcagagacagaaacatgtccaccagctcagagacagaaacatgtccatcagctcagagacagaaacatgtccatcagctcagagacagaaacatcttcaccggctcagagacagaaacatctccaccagctcagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494592 lncRNA downstream 607 72688695 ~ 72689182 (-) True G436850
TU494591 lncRNA downstream 13026 72676559 ~ 72676763 (-) True G436849
TU494590 lncRNA downstream 14465 72675118 ~ 72675324 (-) True G436848
TU494587 lncRNA downstream 43520 72645908 ~ 72646269 (-) True G436845
TU494580 lncRNA downstream 78265 72611312 ~ 72611524 (-) True G436838
TU494598 lncRNA upstream 50886 72741269 ~ 72743747 (-) False G436856
TU494599 lncRNA upstream 50886 72741269 ~ 72746273 (-) True G436856
TU494600 lncRNA upstream 51377 72741760 ~ 72744555 (-) True G436857
TU494640 lncRNA upstream 124744 72815127 ~ 72871343 (-) True G436896
TU494648 lncRNA upstream 136062 72826445 ~ 72828605 (-) True G436903
XM_036978308.1 mRNA downstream 329918 72279402 ~ 72359871 (-) False LOC110524508
XM_036978309.1 mRNA downstream 329919 72278491 ~ 72359870 (-) False LOC110524508
XM_036978306.1 mRNA downstream 329921 72275458 ~ 72359868 (-) False LOC110524508
XM_036978307.1 mRNA downstream 329921 72275458 ~ 72359868 (-) False LOC110524508
XM_036978305.1 mRNA downstream 329922 72275458 ~ 72359867 (-) False LOC110524508
XM_036978324.1 mRNA upstream 161685 72852068 ~ 72858397 (-) False LOC110524515
XM_036978323.1 mRNA upstream 161685 72852068 ~ 72864137 (-) False LOC110524515
XM_036978322.1 mRNA upstream 161685 72852068 ~ 72866266 (-) False LOC110524515
XM_036978325.1 mRNA upstream 165671 72856054 ~ 72866268 (-) True LOC110524515
XM_021604242.2 mRNA upstream 314872 73005255 ~ 73010401 (-) False LOC110524517
TU494589 other downstream 16963 72672154 ~ 72672826 (-) True G436847
TU494584 other downstream 72845 72616296 ~ 72616944 (-) True G436842
TU494572 other downstream 101213 72588284 ~ 72588576 (-) True G436830
TU493828 other downstream 568092 72040962 ~ 72121697 (-) True G436172
TU492898 other downstream 1402797 71286390 ~ 71286992 (-) True il23r
TU494616 other upstream 84178 72774561 ~ 72775868 (-) True G436873
TU494824 other upstream 404411 73094794 ~ 73095336 (-) True G437054
TU494844 other upstream 431729 73122112 ~ 73125038 (-) True G437074
TU494857 other upstream 455975 73146358 ~ 73147128 (-) False G437079
TU494858 other upstream 455975 73146358 ~ 73147128 (-) False G437079

Expression Profile