RNA id: TU494649


Basic Information

Item Value
RNA id TU494649
length 824
lncRNA type read_through
GC content 0.34
exon number 2
gene id G436904
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72829457 ~ 72830566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAATAGTAACATTATTACATGGTGGAGACGTAAATCAACAGAAAATAAATAAGTATTCTAAAAATCCACAGTAGAATGCTATCGTATTCATCAAGATAAAAATAATGTGTCAATTTACATTAAGAAAACGTTATCTGCGGTAAGCATAAAATATGTCTAGAAATATTATGTAATCAAACAGCATGTTTCCCTTTTACTCCACttcctcatcttcttcttcttcgtcttttTCTATTGTCCAAACAGTTATTCAAGTTGTCAGTCCAGATGAGTCTAATTACGCATAGACTTTGGCCATAAAATAGGGAGTCACTGGCATCAGAGTTGATGTAGTACTAGCAgtagcacagacagacaggttaggggTCGATGACAGCCAGCTATGagtgtctggtgtggttgtgatGATGGGTAAGGGTCCTATCACTCAGACTGAGGGATGatatgaagcatggaggtggtgatAGTATGACTGTAAGAGGTTACAGGGTACATCAGTGGAAACGTGTTATTGGCACATGGATATTGATAAACATGGATTCTGCTAAAACAGATATAGATAAACATGGATATTGGTAAACATGGATTCTGCTAAAACAGATATTGATAAACATGGATGTTGATAAACATGGATTTTGATAAAACAGATATTGATAAACATGGATTTTGATAAAACAGATATGGATAAACATGGATGTTGATAAACATGGATGTTAATAACACAGATATTGATAAACATGGATGTTGATAAACATGGATGTTAATAAAACATATATTGATAAACATGGATGTTGATAAACATGGATGTTAATAAAACAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494648 lncRNA downstream 852 72826445 ~ 72828605 (-) True G436903
TU494599 lncRNA downstream 83184 72741269 ~ 72746273 (-) True G436856
TU494600 lncRNA downstream 84902 72741760 ~ 72744555 (-) True G436857
TU494598 lncRNA downstream 85710 72741269 ~ 72743747 (-) False G436856
TU494593 lncRNA downstream 139074 72689789 ~ 72690383 (-) True G436851
TU494673 lncRNA upstream 41416 72871982 ~ 72872221 (-) True G436927
TU494785 lncRNA upstream 204337 73034903 ~ 73035154 (-) True G437022
TU494782 lncRNA upstream 205345 73035911 ~ 73036747 (-) False G437020
TU494783 lncRNA upstream 205345 73035911 ~ 73038795 (-) True G437020
TU494788 lncRNA upstream 209977 73040543 ~ 73041059 (-) True G437024
XM_036978308.1 mRNA downstream 469586 72279402 ~ 72359871 (-) False LOC110524508
XM_036978309.1 mRNA downstream 469587 72278491 ~ 72359870 (-) False LOC110524508
XM_036978306.1 mRNA downstream 469589 72275458 ~ 72359868 (-) False LOC110524508
XM_036978307.1 mRNA downstream 469589 72275458 ~ 72359868 (-) False LOC110524508
XM_036978305.1 mRNA downstream 469590 72275458 ~ 72359867 (-) False LOC110524508
XM_036978324.1 mRNA upstream 21502 72852068 ~ 72858397 (-) False LOC110524515
XM_036978323.1 mRNA upstream 21502 72852068 ~ 72864137 (-) False LOC110524515
XM_036978322.1 mRNA upstream 21502 72852068 ~ 72866266 (-) False LOC110524515
XM_036978325.1 mRNA upstream 25488 72856054 ~ 72866268 (-) True LOC110524515
XM_021604242.2 mRNA upstream 174689 73005255 ~ 73010401 (-) False LOC110524517
TU494616 other downstream 53589 72774561 ~ 72775868 (-) True G436873
TU494589 other downstream 156631 72672154 ~ 72672826 (-) True G436847
TU494584 other downstream 212513 72616296 ~ 72616944 (-) True G436842
TU494572 other downstream 240881 72588284 ~ 72588576 (-) True G436830
TU493828 other downstream 707760 72040962 ~ 72121697 (-) True G436172
TU494824 other upstream 264228 73094794 ~ 73095336 (-) True G437054
TU494844 other upstream 291546 73122112 ~ 73125038 (-) True G437074
TU494857 other upstream 315792 73146358 ~ 73147128 (-) False G437079
TU494858 other upstream 315792 73146358 ~ 73147128 (-) False G437079
TU494859 other upstream 315792 73146358 ~ 73147128 (-) True G437079

Expression Profile