RNA id: TU494783



Basic Information


Item Value
RNA id TU494783
length 715
lncRNA type read_through
GC content 0.53
exon number 3
gene id G437020
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73035911 ~ 73038795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtgaccagtagagacagggtgtgtgtgtgtgtgttacctagctgctgtgttcgtagctgtagacaggtgaccagtagagacagggtgtgtgtgtgtgtgttacctagctgctgtgtccgtagctgtagacaggtgaccagtagagacagggtgtgtgtgtgtgtgttacctagctgctgtgttcgtagctgtagacaggtgaccagtagagacagggtgtgtgtgtgtgttacctagctgctgtgtccgtagctgtagacaggtgaccagtagtgacagggtgtgtgtgtgtgtgtgtgtgttacctagctgctgtgtccgtagctgtagacaggtgaccagtagtgacagggtgtgtgtgtgtgtgtgttacctagctgctgtgtccgtagctgtagacaggtgaccagtagagacagggtgtgtgtgtgtgtgtgttacctagctgctgtgttcgtagctgtagacaggtgaccagtagtgacagggtgtgtgttacctagctgctgtgtccgtagctgtagacaggtgaccagtagagacagggtgtgtgttacctagctgctgtgtCCGTAGCTGTAGACAGGTGACCAGTAGAGACAGGGCCTCTCTAGCAATGATGCAGTCTTTAATAGAAACACTCTGCTGCTTCACACATATCCCAGCATGCAACGCTGTGGGCGGCGCCTCGCCCTCACTGCTGGAGCTGCAGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494785 lncRNA downstream 757 73034903 ~ 73035154 (-) True G437022
TU494673 lncRNA downstream 163690 72871982 ~ 72872221 (-) True G436927
TU494640 lncRNA downstream 164568 72815127 ~ 72871343 (-) True G436896
TU494788 lncRNA upstream 1748 73040543 ~ 73041059 (-) True G437024
TU494737 lncRNA upstream 2288 73041083 ~ 73041743 (-) False G436982
TU494736 lncRNA upstream 2695 73041490 ~ 73041743 (-) True G436982
TU494734 lncRNA upstream 3121 73041916 ~ 73042334 (-) False G436981
TU494733 lncRNA upstream 3303 73042098 ~ 73042334 (-) False G436981
XM_021604242.2 mRNA downstream 25510 73005255 ~ 73010401 (-) False LOC110524517
XM_021604243.2 mRNA downstream 25510 73005255 ~ 73010401 (-) False LOC110524517
XM_021604244.2 mRNA downstream 25510 73005255 ~ 73010401 (-) False LOC110524517
XM_021604245.2 mRNA downstream 25510 73005255 ~ 73010401 (-) True LOC110524517
XM_036978325.1 mRNA downstream 169643 72856054 ~ 72866268 (-) True LOC110524515
XM_021604246.2 mRNA upstream 15049 73053844 ~ 73062414 (-) False LOC110524518
XM_021604248.2 mRNA upstream 67244 73106039 ~ 73109903 (-) True LOC110524520
XM_021604252.2 mRNA upstream 93307 73132102 ~ 73163431 (-) False LOC110524523
XM_021604253.2 mRNA upstream 135911 73174706 ~ 73180889 (-) True LOC110524524
XM_036976526.1 mRNA upstream 149230 73188025 ~ 73188938 (-) True LOC110522885
TU494616 other downstream 260043 72774561 ~ 72775868 (-) True G436873
TU494589 other downstream 363085 72672154 ~ 72672826 (-) True G436847
TU494584 other downstream 418967 72616296 ~ 72616944 (-) True G436842
TU494572 other downstream 447335 72588284 ~ 72588576 (-) True G436830
TU493828 other downstream 914214 72040962 ~ 72121697 (-) True G436172
TU494824 other upstream 55999 73094794 ~ 73095336 (-) True G437054
TU494844 other upstream 83317 73122112 ~ 73125038 (-) True G437074
TU494857 other upstream 107563 73146358 ~ 73147128 (-) False G437079
TU494858 other upstream 107563 73146358 ~ 73147128 (-) False G437079
TU494859 other upstream 107563 73146358 ~ 73147128 (-) True G437079

Expression Profile