RNA id: TU494845


Basic Information

Item Value
RNA id TU494845
length 945
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G437075
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73125420 ~ 73126364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAAGGTACGAGGTTAACACATGCTTAGGAGATATTATACGGTTTCTATGAGATAATAGCAGTCAGTTTACATGACCATTATTAATTATGAAGCCTTAATTCACAAAAAGTGACGTTAACTGATGAAGATAATCTCATAGAGCAAAACGTATAAAATATCCGATGCCTGTGTTTACCACATACCTTATTTTCAGCGTTTATCCAAAAACCCTATAAAACGCCAATAATTTTCATGGtagagttagtgcctacaaaaagacgcaATTACTATTTATCTGTCTATACGGTCCTCAATTCAAAGTCCAATGGGGTGTccttttttacatgttttatttatttcacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgcgacctggtcaagataaagcaaagcagttcgacacatatagcacagagttacacatgaaataaacaaacatacagtcaataaatacaatagagaaagtctatatacagtgtgtgcaaatgaggtaggataagaggggtgaggcaatacataggccatagtggcgaaattattacagtatggcaaattaaacactgggatgatagatgtgcagaagatgagtgtgcaaggagtggcactggggtgcaaaggagcaaaataaatacaataatacaATAAATGGTGCaaaggggaagaaaaaaaaatataaatcaaataaataaccatatggtgatgaggtagttggatgggctatttacagataggctttgtacaggtgcagtgatctgtgagctggtgcttaaagctaatgagggagatatgagtctccagcttcagtgatttttgcagttagttccagtcattggcagcagagaactggaaggaaaggcagccgaaggaggaattggctttgggggtgaccagtgaaatatacctgctggagcgcgtgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494843 lncRNA downstream 3393 73121401 ~ 73122027 (-) True G437073
TU494839 lncRNA downstream 10568 73114613 ~ 73114852 (-) True G437069
TU494837 lncRNA downstream 11691 73113458 ~ 73113729 (-) True G437067
TU494836 lncRNA downstream 12088 73113122 ~ 73113332 (-) True G437066
TU494834 lncRNA downstream 13616 73111605 ~ 73111804 (-) True G437064
TU494855 lncRNA upstream 29278 73155642 ~ 73163384 (-) True LOC110524523
TU495113 lncRNA upstream 313880 73440244 ~ 73440536 (-) True G437318
TU495538 lncRNA upstream 360303 73486667 ~ 73488455 (-) True G437660
TU495566 lncRNA upstream 405244 73531608 ~ 73532196 (-) True G437680
TU495601 lncRNA upstream 467730 73594094 ~ 73594489 (-) True G437705
XM_021604248.2 mRNA downstream 15517 73106039 ~ 73109903 (-) True LOC110524520
XM_021604246.2 mRNA downstream 63006 73053844 ~ 73062414 (-) False LOC110524518
XM_021604243.2 mRNA downstream 115019 73005255 ~ 73010401 (-) False LOC110524517
XM_021604252.2 mRNA upstream 5738 73132102 ~ 73163431 (-) False LOC110524523
XM_021604253.2 mRNA upstream 48342 73174706 ~ 73180889 (-) True LOC110524524
XM_036976526.1 mRNA upstream 61661 73188025 ~ 73188938 (-) True LOC110522885
XM_021604256.2 mRNA upstream 81496 73207860 ~ 73218158 (-) True LOC100135942
XM_036978342.1 mRNA upstream 244075 73370439 ~ 73419304 (-) False LOC110524526
TU494844 other downstream 382 73122112 ~ 73125038 (-) True G437074
TU494824 other downstream 30084 73094794 ~ 73095336 (-) True G437054
TU494616 other downstream 349552 72774561 ~ 72775868 (-) True G436873
TU494589 other downstream 452594 72672154 ~ 72672826 (-) True G436847
TU494584 other downstream 508476 72616296 ~ 72616944 (-) True G436842
TU494857 other upstream 19994 73146358 ~ 73147128 (-) False G437079
TU494858 other upstream 19994 73146358 ~ 73147128 (-) False G437079
TU494859 other upstream 19994 73146358 ~ 73147128 (-) True G437079
TU495056 other upstream 244244 73370608 ~ 73410339 (-) True LOC110524526
TU497050 other upstream 1738895 74865259 ~ 74927797 (-) True G439002

Expression Profile