RNA id: TU494859


Basic Information

Item Value
RNA id TU494859
length 587
RNA type TUCP
GC content 0.52
exon number 3
gene id G437079
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73146358 ~ 73147128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagatacagatgaagaaagagagagagaaacagatgggCAGATggactgtcagagagagagaaacggatgGGCAGATGgattgtcagagagagaggcatgttcccagagaaagagagagaaacagatgggCAGATggactgtcagagagagaggcacgttcccagagagagagagagagaaacagatgggCAGATggactgtcagagagagaggcacGTTcccagagattgagagatgggcagatggactgtcagagagagaggcacgttcccagagagagagagagaaacagatgggCAGATggactgtcagagagagaggcacgttcccagagagagagagagaaacagatgggCAGATggactgtcagagagagaggcacgttcccagagagagagagagaaacagatgggCAGATggactgtcagagagagaggcatgttcccagagagagagaaacagatgggCAGATggactgtcagagagagaggcacattcccagagagagagagagaaacagatgggCAAATggactgtcagagagagaggcacgttcccagagagagagagagaaacagatgggCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494845 lncRNA downstream 19994 73125420 ~ 73126364 (-) True G437075
TU494843 lncRNA downstream 24331 73121401 ~ 73122027 (-) True G437073
TU494839 lncRNA downstream 31506 73114613 ~ 73114852 (-) True G437069
TU494837 lncRNA downstream 32629 73113458 ~ 73113729 (-) True G437067
TU494836 lncRNA downstream 33026 73113122 ~ 73113332 (-) True G437066
TU494855 lncRNA upstream 8514 73155642 ~ 73163384 (-) True LOC110524523
TU495113 lncRNA upstream 293116 73440244 ~ 73440536 (-) True G437318
TU495538 lncRNA upstream 339539 73486667 ~ 73488455 (-) True G437660
TU495566 lncRNA upstream 384480 73531608 ~ 73532196 (-) True G437680
TU495601 lncRNA upstream 446966 73594094 ~ 73594489 (-) True G437705
XM_021604248.2 mRNA downstream 36455 73106039 ~ 73109903 (-) True LOC110524520
XM_021604246.2 mRNA downstream 83944 73053844 ~ 73062414 (-) False LOC110524518
XM_021604243.2 mRNA downstream 135957 73005255 ~ 73010401 (-) False LOC110524517
XM_021604253.2 mRNA upstream 27578 73174706 ~ 73180889 (-) True LOC110524524
XM_036976526.1 mRNA upstream 40897 73188025 ~ 73188938 (-) True LOC110522885
XM_021604256.2 mRNA upstream 60732 73207860 ~ 73218158 (-) True LOC100135942
XM_036978342.1 mRNA upstream 223311 73370439 ~ 73419304 (-) False LOC110524526
XM_036978340.1 mRNA upstream 223311 73370439 ~ 73421682 (-) False LOC110524526
TU494844 other downstream 21320 73122112 ~ 73125038 (-) True G437074
TU494824 other downstream 51022 73094794 ~ 73095336 (-) True G437054
TU494616 other downstream 370490 72774561 ~ 72775868 (-) True G436873
TU494589 other downstream 473532 72672154 ~ 72672826 (-) True G436847
TU494584 other downstream 529414 72616296 ~ 72616944 (-) True G436842
TU495056 other upstream 223480 73370608 ~ 73410339 (-) True LOC110524526
TU497050 other upstream 1718131 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 1816332 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 2116345 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 2424121 75571249 ~ 75575569 (-) True G439788

Expression Profile