RNA id: TU495677



Basic Information


Item Value
RNA id TU495677
length 313
lncRNA type intronic
GC content 0.46
exon number 1
gene id G437771
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73685559 ~ 73685871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagcaatgatgacggcacttgtttccttgcaggtaaccatggctgacagaggaagagcaatgattccaagcaccaccctccttttgaagcttccagtctgttattcgaactcaatcagcatgacagagtgatcttcaGCCTTGTCGTCGTCAAcattcacacctgtgttaacgagagaatcactgacatgatgccagctggtccttttgtggcagggctgaaatgcagtggacatgtttttggggattcagttaatttgcatggcaaagagggacttcgcAACTAATTGCAATtcctctgatcactcttcata

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU495610 lncRNA downstream 79084 73605794 ~ 73606475 (-) True G437713
TU495607 lncRNA downstream 83647 73601684 ~ 73601912 (-) True G437710
TU495606 lncRNA downstream 83933 73601071 ~ 73601626 (-) True G437709
TU495599 lncRNA downstream 87549 73597377 ~ 73598010 (-) True G437703
TU495601 lncRNA downstream 91070 73594094 ~ 73594489 (-) True G437705
TU495714 lncRNA upstream 61008 73746879 ~ 73749064 (-) True G437807
TU495801 lncRNA upstream 146617 73832488 ~ 73832692 (-) True G437873
TU495806 lncRNA upstream 154030 73839901 ~ 73840186 (-) True G437878
TU495793 lncRNA upstream 158803 73844674 ~ 73847720 (-) False LOC118964642
TU495794 lncRNA upstream 158803 73844674 ~ 73846862 (-) False LOC118964642
XM_036978348.1 mRNA downstream 102460 73580650 ~ 73583099 (-) True LOC110524534
XM_021604281.2 mRNA downstream 102464 73579899 ~ 73583095 (-) False LOC110524534
XM_021604266.2 mRNA downstream 110737 73557373 ~ 73574822 (-) True LOC110524532
XM_021604258.2 mRNA downstream 241045 73431563 ~ 73444514 (-) True LOC110524527
XM_036978341.1 mRNA downstream 263876 73370439 ~ 73421683 (-) False LOC110524526
XM_036978360.1 mRNA upstream 5985 73691856 ~ 73720855 (-) False palld
XM_036978359.1 mRNA upstream 5985 73691856 ~ 73720862 (-) False palld
XM_036978358.1 mRNA upstream 5985 73691856 ~ 73720884 (-) False palld
XM_036978357.1 mRNA upstream 5985 73691856 ~ 73760172 (-) False palld
XM_036978350.1 mRNA upstream 5985 73691856 ~ 73787594 (-) False palld
TU495056 other downstream 275220 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 538431 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 538431 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 538431 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 560521 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 1179388 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 1277589 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 1577602 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 1885378 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 2900587 76586458 ~ 76590370 (-) True G441168

Expression Profile


TU495677 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU495677 Expression in each Bioproject

Bar chart with 20 bars.
TU495677 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.