RNA id: TU495926



Basic Information


Item Value
RNA id TU495926
length 230
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G437992
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74110008 ~ 74110237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACTTCATCACTGCTTATTTTggaagaagtgttgacaagctgaatgtaccgagttgtttgtttaaactactagcacacagctcggacacccatgcattccccacaagacattccaccagaggtctcttcaaaactccagaacagactatggggaGGTTCCCAgttctacatagagccatgactacatggaactctattccacatcaggtaactgatacaagcagtagaat

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU495925 lncRNA downstream 341 74109443 ~ 74109667 (-) True G437991
TU495886 lncRNA downstream 40129 74069535 ~ 74069879 (-) True G437954
TU495885 lncRNA downstream 41581 74067952 ~ 74068427 (-) True G437953
TU495884 lncRNA downstream 42511 74067126 ~ 74067497 (-) True G437952
TU495875 lncRNA downstream 50426 74055001 ~ 74059582 (-) True G437945
TU496277 lncRNA upstream 99561 74209798 ~ 74216683 (-) False G438307
TU496278 lncRNA upstream 102153 74212390 ~ 74217446 (-) True G438307
TU496404 lncRNA upstream 330613 74440850 ~ 74445900 (-) True G438409
TU496405 lncRNA upstream 335866 74446103 ~ 74450669 (-) True G438410
TU496422 lncRNA upstream 358868 74469105 ~ 74469898 (-) True G438424
XM_036979058.1 mRNA downstream 34417 74062228 ~ 74075591 (-) True LOC110523002
XM_021604322.2 mRNA downstream 93970 74009042 ~ 74016038 (-) True sgcb
XM_021604321.2 mRNA downstream 101439 73993983 ~ 74008569 (-) True LOC110524549
XM_021604320.2 mRNA downstream 137878 73969591 ~ 73972130 (-) True ociad2
XM_036978371.1 mRNA downstream 156131 73850914 ~ 73953877 (-) True fryl
XM_036978386.1 mRNA upstream 12066 74122303 ~ 74354093 (-) False LOC110524553
XM_036978387.1 mRNA upstream 12089 74122326 ~ 74354093 (-) True LOC110524553
XM_036978393.1 mRNA upstream 295609 74405846 ~ 74472255 (-) False LOC110524556
XM_036978392.1 mRNA upstream 295609 74405846 ~ 74499160 (-) False LOC110524556
XM_021604331.2 mRNA upstream 295609 74405846 ~ 74500847 (-) False LOC110524556
TU495056 other downstream 699669 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 962880 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 962880 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 962880 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 984970 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 755022 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 853223 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 1153236 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 1461012 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 2476221 76586458 ~ 76590370 (-) True G441168

Expression Profile


TU495926 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

TU495926 Expression in each Bioproject

Bar chart with 12 bars.
TU495926 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.