RNA id: TU496277


Basic Information

Item Value
RNA id TU496277
length 1426
lncRNA type intronic
GC content 0.42
exon number 4
gene id G438307
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74209798 ~ 74217446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctactttctatactctactctctcctctcgactttctacactctactctctcctctctactttctacactctactttctcctctctactctctcctctctactttctcctctctactttctcctctctactctctcctctctactctctcctctactttctacactctactttctcctttctactttctcctctctaatttctcctctaccttctcctctctactctctcctctctacactctactttcccctctctactttctactcctctctactttctactttctcctctctactttctcctctctactttctcctctctactttctcctctctcctctacactctactttctcctttctactcctctctactttctcctctctcctttctcctttctcctctctcctttctcctttctcctcactctactttctacactctactttctacactctactttctcctttctactttctcctttctactttctcctctctactttcttcactctactttctcctctctactctctcctctttactttctcctctctactttctcctctctattttctcctttctctactttctcctctctactttctacactctactctctcctctctactttctcctctctattttctcctctctacactctactttctcctctctcctctctactttctcctctctacactctactttctcctctctacactctactttctcctctctcctctctacactctactttctcctctctactctctactcctttctactcctctactttctacactctactctctcctctctactttctacactctactctctcctctctactttctacactctactctctactctactttctacactctactttctcctttctactttctcctctctactttctactctctcctctctacactctactttctcctctctgctTTCTACTCCTCTACTttctactctctcctttctcctctctactttctcctttctcctcactctactttctcctctctactttctctctcctctactttctcatTTCTGCTTTCTCctgtctactctctcctctctactttctctcctctctactttctactctctactttctcctctctacttcctactcctctctactttctactctctcctttctcctctctactttctcctttctcctctctactttctcctttctcctctactttctcctttctctctcctctactttctcctttctgCTTTCTCctgtctactctctcctctctactttctctcctctctactttctactctctactttctactctctcctctctttctcctctctactttctcctctctactttctcatctctactttctcctctctactttctactcctttctcctctcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495926 lncRNA downstream 99561 74110008 ~ 74110237 (-) True G437992
TU495925 lncRNA downstream 100131 74109443 ~ 74109667 (-) True G437991
TU495886 lncRNA downstream 139919 74069535 ~ 74069879 (-) True G437954
TU495885 lncRNA downstream 141371 74067952 ~ 74068427 (-) True G437953
TU495884 lncRNA downstream 142301 74067126 ~ 74067497 (-) True G437952
TU496404 lncRNA upstream 224167 74440850 ~ 74445900 (-) True G438409
TU496405 lncRNA upstream 229420 74446103 ~ 74450669 (-) True G438410
TU496422 lncRNA upstream 252422 74469105 ~ 74469898 (-) True G438424
TU496445 lncRNA upstream 299278 74515961 ~ 74516300 (-) True G438447
TU496450 lncRNA upstream 304143 74520826 ~ 74521029 (-) True G438452
XM_036979058.1 mRNA downstream 134207 74062228 ~ 74075591 (-) True LOC110523002
XM_021604322.2 mRNA downstream 193760 74009042 ~ 74016038 (-) True sgcb
XM_021604321.2 mRNA downstream 201229 73993983 ~ 74008569 (-) True LOC110524549
XM_021604320.2 mRNA downstream 237668 73969591 ~ 73972130 (-) True ociad2
XM_036978371.1 mRNA downstream 255921 73850914 ~ 73953877 (-) True fryl
XM_036978393.1 mRNA upstream 189163 74405846 ~ 74472255 (-) False LOC110524556
XM_036978392.1 mRNA upstream 189163 74405846 ~ 74499160 (-) False LOC110524556
XM_021604331.2 mRNA upstream 189163 74405846 ~ 74500847 (-) False LOC110524556
XM_021604329.2 mRNA upstream 189163 74405846 ~ 74500848 (-) False LOC110524556
XM_036978391.1 mRNA upstream 189163 74405846 ~ 74500849 (-) False LOC110524556
TU495056 other downstream 799459 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 1062670 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 1062670 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 1062670 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 1084760 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 648576 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 746777 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 1046790 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 1354566 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 2369775 76586458 ~ 76590370 (-) True G441168

Expression Profile