RNA id: TU496994


Basic Information

Item Value
RNA id TU496994
length 2560
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G438951
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74844036 ~ 74846616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaatgttttggtacccttccccagatctgtacctcgacacaatcctgtctcggagctctatggacaattcctttgacctcatggcttggtttttgctctgacatgcactgtcaactgtgggaccttataaagacaggtatttgcctttctaaatcatgtccagtcaattgaatttactacaggtgagcttcaatcaagttgtagaaacagcaagggtgatcaatggaaacaggatgcacctgatctcaatttcgagtctcatagcaaagggtctgaataattgtatttttaatacatttgtatgtGCTTTGTTAttttggggtgttgtgtgtagattgatcaggaaaaaaatatgtaatacattttagaaaaagcctgtaatgtaataaaatgtggattaagtcaaggggtctgaatactttccaaatgcacagtaTGTTCATGTACCTCATGGCAAAACAGTCCCAGGCCCTTGTGTTTACAGTGCAGTAAGTCAGTCTGCTCGTCTCTGCTTTTTGAAATTCACGCTTAGTGCAAATGGTGGTCCCTGCTGCTAGGTTATTGGTGGTGCATTGCCATGTACAGCAGAACTTAGCTGGTACTTCTTATAACCACAAAGTTATTGTCTTGCCAGTAATGCATATCGACACAGATTTATTCAACACGTTGTACCGAAACTGTCCGTGACTCTTACGTAAAGTTGTTTGGTCACTGTGATTTTATAATATTTTTTGGGACACAAAGTAAACCTGTGCCACCAATGGCGTGATAAACCTTACAGCTACCAGTACCGGGTCAGGCAGTGCAATACTTGAATGAATGTAATTCAATATCAAACGCTAACATAGCTGTCTGAAGATGGTCATGCATAAATAAATGAATAGACGAGGAGGGCTTAGTTAAAAATATTTTAACAGAAAACAAACCTCAGATTTTAAGATTATTTTTCTATGGCCAAGCTAGACCTCAAACGATGAATTGAGCGAGTAGATAGATATATAACGTCATACACTGTAATATACTGCGTTCTCTGTGTAGAAAAGAAAGGAAAACAAAATCCTACCCAATGCGTTACCTCAAAGGAGAAAGGAATTAAACAAACTGTGACATGCGTGAGGACTGTTGATCTAATGTACCCAAAACAGAACTCATCATGAGCTCATCACAAGCTCATGGTTATGCAAAGGTGTACAGAAATATTTAAAGAAATACCTATTTAACATCATATATCCCCCCATGTAATTGGTTTCTTTTTCCCAATAAATGTTGTAAATTCTCTGAAAATGTGATGAGGAATACtagatacatttttttgtttttattaagtTTTAACAATTAGGAATGCTAGATTTAAATATTTTGGATCATCTCTAGGATGACCACATTCATGGTACCTTTTAACAAATGACCCTTAAGACTTATCCACATGTTTATTGGACGTATCAAAGTAGGGATCCCCTATGTTGTTTCTCAAAAGGCTACAATAAGGTAATTCAACCCAGACTTTGTGAGGTGGGGAAAATGGAGGGAGTGGTATTGATGTTTTGTATCCAAAGTGAAAGATGGGAATAAATGGTTATACCTGGTTTTAATACCCAGATGGGAAGCCCAATGTAAAAGGTGGTGAATCATGTtctaatgtacagtaccagtcagtttggacacacctactcactcaagggtgattctttatttttactattttctacattgtagaataaatgaagacatcaaaactatgaaataacacatcaaatcatgtagtaaccaaaaaaatgtgttaaacaaatcaaaatatattttcaaaggAGCCAcactttgctttgatgacagctttgcacattcttggcattctctcaaactgattcacctggaatgcttttccaacagtcttgaaagagttgccacatattctgagcacttgttagcggcttttccttcactctgcaatccaactcatcccaaaccatctcaattcggttggggtcgTCTGATGtcttacacagcatggaggtgtgttgtgtcatagTCCTGAAAAACAGatcgtcccactaagcgcaaaccagatgggatggcgtgtcgctgcagaatattgtggtagccatgctggttaagtgtgccttgaattctaaataaatgactGACAATGTcacctctgcagtagaggtaactctgggtcttcctttcctgtggcggtcctcatgagaggcagtttcatcatagcgcttcatggtttttgcgactgcacttgaagttcTTGCacttttccagattgactgacctgcatgtcttaaagtaatgatggactgttgtttctctttgcttatttgagctgttcttgccataatatggacttggtttgtaccaaataaggctatcttctgtataccaccctaccttgtcacaacacaactgattggctcaaacacattaaaaataaataaaacaaattaacttttaacaaggcacacctgttaattgaaatgcattctaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcaaggctgaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497004 lncRNA downstream 7931 74835494 ~ 74836105 (-) True G438959
TU497001 lncRNA downstream 67834 74775199 ~ 74776202 (-) True G438957
TU496996 lncRNA downstream 72644 74770467 ~ 74771392 (-) True G438952
TU496711 lncRNA downstream 135094 74708660 ~ 74708942 (-) True G438696
TU496710 lncRNA downstream 138106 74705707 ~ 74705930 (-) True G438695
TU497060 lncRNA upstream 85555 74932171 ~ 74934342 (-) True G439012
TU497118 lncRNA upstream 115491 74962107 ~ 74962485 (-) False LOC110523004
TU497120 lncRNA upstream 118145 74964761 ~ 74965137 (-) True G439065
TU497132 lncRNA upstream 146520 74993136 ~ 74999899 (-) True G439076
TU497163 lncRNA upstream 198411 75045027 ~ 75094005 (-) False LOC110524567
XR_005051858.1 mRNA downstream 23729 74807206 ~ 74820307 (-) False LOC118964644
XR_005051859.1 mRNA downstream 23729 74807206 ~ 74820307 (-) True LOC118964644
XM_021604330.2 mRNA downstream 342931 74405846 ~ 74501105 (-) True LOC110524556
XM_021604332.2 mRNA downstream 343186 74405846 ~ 74500850 (-) False LOC110524556
XM_036978391.1 mRNA downstream 343187 74405846 ~ 74500849 (-) False LOC110524556
XM_021604345.2 mRNA upstream 2214 74848830 ~ 74857210 (-) False LOC100135915
XM_021604339.2 mRNA upstream 2214 74848830 ~ 74891311 (-) False LOC100135915
XM_021604340.2 mRNA upstream 2214 74848830 ~ 74891311 (-) False LOC100135915
XM_021604341.2 mRNA upstream 2214 74848830 ~ 74891311 (-) False LOC100135915
XM_021604342.2 mRNA upstream 2214 74848830 ~ 74891311 (-) False LOC100135915
TU495056 other downstream 1433697 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 1696908 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 1696908 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 1696908 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 1718998 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 18643 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 116844 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 416857 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 724633 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 1739842 76586458 ~ 76590370 (-) True G441168

Expression Profile