RNA id: TU497820



Basic Information


Item Value
RNA id TU497820
length 228
lncRNA type intronic
GC content 0.44
exon number 1
gene id G439691
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75426944 ~ 75427171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCCAGTGGGAAGAATTGAAGCTCCACTTTGAGTTGACAAAGGCCAGTGAGCATTGATACATGGCGGATGTGCTCCACACCATGTACATGGACAAGACCAACTATGTCTACCTGACATTCTTGAAATCAATCCTGTCCGACTTACAAGTTGCAGTGAAGTCATTTGAGGGAGAGCAAACGGATGCTGTCAAGCTTTTTGACAATCTGGTACACTTCTTAACATCAATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU497819 lncRNA downstream 418 75426147 ~ 75426526 (-) True G439690
TU497815 lncRNA downstream 6240 75420385 ~ 75420704 (-) True G439687
TU497814 lncRNA downstream 7390 75419340 ~ 75419554 (-) True G439686
TU497813 lncRNA downstream 8335 75418252 ~ 75418609 (-) True G439685
TU497811 lncRNA downstream 13940 75412454 ~ 75413004 (-) True G439683
TU497960 lncRNA upstream 189008 75616179 ~ 75636229 (-) True G439821
TU497962 lncRNA upstream 190492 75617663 ~ 75667165 (-) True G439822
TU498018 lncRNA upstream 286391 75713562 ~ 75713846 (-) True G439870
TU498023 lncRNA upstream 291662 75718833 ~ 75719041 (-) True G439875
TU498035 lncRNA upstream 308898 75736069 ~ 75736291 (-) True G439887
XM_021604371.2 mRNA downstream 93468 75299784 ~ 75333476 (-) False LOC110524574
XM_021604372.2 mRNA downstream 95352 75299095 ~ 75331592 (-) False LOC110524574
XM_021604373.2 mRNA downstream 96750 75299095 ~ 75330194 (-) False LOC110524574
XM_036978421.1 mRNA downstream 130336 75237541 ~ 75296608 (-) False LOC110524573
XM_021604378.2 mRNA upstream 186419 75613590 ~ 75624467 (-) True LOC110524579
XM_021604379.2 mRNA upstream 231361 75658532 ~ 75660672 (-) True LOC110524580
XM_021604380.2 mRNA upstream 244542 75671713 ~ 75698920 (-) False rgs8
XM_021604382.2 mRNA upstream 244542 75671713 ~ 75706466 (-) True rgs8
XM_021601424.2 mRNA upstream 312939 75740110 ~ 75743709 (-) True LOC110523006
TU497719 other downstream 161541 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 463248 74963460 ~ 74963696 (-) True LOC110523004
TU497050 other downstream 499147 74865259 ~ 74927797 (-) True G439002
TU495056 other downstream 2016605 73370608 ~ 73410339 (-) True LOC110524526
TU494859 other downstream 2279816 73146358 ~ 73147128 (-) True G437079
TU497923 other upstream 144078 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 1159287 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 1475211 76902382 ~ 76902771 (-) True G441483
TU499853 other upstream 1586828 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 1979571 77406742 ~ 77407135 (-) True G442115

Expression Profile