RNA id: TU498076



Basic Information


Item Value
RNA id TU498076
length 204
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G439927
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75759998 ~ 75760201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccaggaccggccaggggagtgggcgagatacATCCCCTGGGCTGAAATGGCCCAGAATTCACTAAGCCACTCCTCTACCAACATGTCACCGTTTCAGTgcgtgttggggtaccagccggtcctggcaccatggcatcagagccagactgaggctcctgcggtggaggagtgggtgcagcgCTCTAAGGAGACCTGGAGTGCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU498035 lncRNA downstream 23707 75736069 ~ 75736291 (-) True G439887
TU498023 lncRNA downstream 40957 75718833 ~ 75719041 (-) True G439875
TU498018 lncRNA downstream 46152 75713562 ~ 75713846 (-) True G439870
TU497962 lncRNA downstream 92833 75617663 ~ 75667165 (-) True G439822
TU497960 lncRNA downstream 123769 75616179 ~ 75636229 (-) True G439821
TU498078 lncRNA upstream 1295 75761496 ~ 75761708 (-) True G439929
TU498080 lncRNA upstream 1571 75761772 ~ 75762028 (-) True G439931
TU498192 lncRNA upstream 75062 75835263 ~ 75835504 (-) True G440040
TU498195 lncRNA upstream 76574 75836775 ~ 75836976 (-) True G440043
TU498233 lncRNA upstream 100419 75860620 ~ 75860843 (-) True G440081
XM_021601424.2 mRNA downstream 16289 75740110 ~ 75743709 (-) True LOC110523006
XM_021604382.2 mRNA downstream 53532 75671713 ~ 75706466 (-) True rgs8
XM_021604380.2 mRNA downstream 61078 75671713 ~ 75698920 (-) False rgs8
XM_021604379.2 mRNA downstream 99326 75658532 ~ 75660672 (-) True LOC110524580
XM_021604378.2 mRNA downstream 135531 75613590 ~ 75624467 (-) True LOC110524579
XM_021604383.2 mRNA upstream 122028 75882229 ~ 75954489 (-) True LOC110524582
XM_036978427.1 mRNA upstream 528720 76288921 ~ 76318618 (-) False LOC110524583
XM_021604384.2 mRNA upstream 528720 76288921 ~ 76318655 (-) False LOC110524583
XM_036978426.1 mRNA upstream 528720 76288921 ~ 76324868 (-) True LOC110524583
XM_021604392.2 mRNA upstream 818042 76578243 ~ 76584083 (-) False LOC110524587
TU497923 other downstream 184429 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 494595 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 796302 74963460 ~ 74963696 (-) True LOC110523004
TU497050 other downstream 832201 74865259 ~ 74927797 (-) True G439002
TU495056 other downstream 2349659 73370608 ~ 73410339 (-) True LOC110524526
TU499371 other upstream 826257 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 1142181 76902382 ~ 76902771 (-) True G441483
TU499853 other upstream 1253798 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 1646541 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 1863098 77623299 ~ 77627214 (-) False G442381

Expression Profile