RNA id: TU498092



Basic Information


Item Value
RNA id TU498092
length 394
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G439943
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75769190 ~ 75769583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catatgagatgattattgtagggtatgtaaacattatataaagtggcatggtttaaagtgactagtgatacatttattacatccaattttgaattattaaagtggcgagagattgagtcagtatgttggcagcagctactcaatgttagtgatggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctcttggtccaagctttgatgtacctgtaccaaccttgccttctggatgatagcggggtgaacaggcagtggctcgggtggctgttgtccttgatgatctttttggccttcctgtgacatcaggtggtgtaggtgtcctagagggtaggtagtttgcccccggtgatgcgttgtgcagacctccaggaccaagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU498081 lncRNA upstream 5935 75762983 ~ 75763255 (+) True G439932
TU498079 lncRNA upstream 7163 75761806 ~ 75762027 (+) True G439930
TU498077 lncRNA upstream 7583 75761403 ~ 75761607 (+) True G439928
TU498059 lncRNA upstream 17299 75751611 ~ 75751891 (+) True G439910
TU498039 lncRNA upstream 31005 75737783 ~ 75738185 (+) True G439891
TU498197 lncRNA downstream 69162 75838745 ~ 75838952 (+) True G440045
TU498216 lncRNA downstream 82927 75852510 ~ 75852767 (+) True G440064
TU498220 lncRNA downstream 84428 75854011 ~ 75854335 (+) True G440068
TU498223 lncRNA downstream 85670 75855253 ~ 75855457 (+) True G440071
TU498254 lncRNA downstream 104411 75873994 ~ 75874215 (+) True G440102
XM_021604376.2 mRNA upstream 197042 75561178 ~ 75572148 (+) True rgs4
XM_021604374.2 mRNA upstream 421294 75332453 ~ 75347896 (+) True LOC110524576
XM_021604362.2 mRNA upstream 597369 75161317 ~ 75171821 (+) False LOC110524571
XM_021604363.2 mRNA upstream 597846 75161317 ~ 75171344 (+) False LOC110524571
XM_036978404.1 mRNA upstream 700445 75061181 ~ 75068745 (+) True LOC118964645
XM_036979061.1 mRNA downstream 492711 76262294 ~ 76264534 (+) True LOC118964720
XM_021604387.2 mRNA downstream 769409 76538992 ~ 76541623 (+) False LOC110524585
XM_021604386.2 mRNA downstream 769410 76538993 ~ 76541623 (+) True LOC110524585
XM_021604388.2 mRNA downstream 793906 76563489 ~ 76566464 (+) False LOC110524586
XM_021604389.2 mRNA downstream 793906 76563489 ~ 76566464 (+) True LOC110524586
TU497242 other upstream 590903 75171304 ~ 75178287 (+) True LOC110524571
TU496740 other upstream 992721 74772009 ~ 74776469 (+) True G438719
TU496738 other upstream 999024 74763204 ~ 74770166 (+) True LOC110524560
TU495122 other upstream 2274106 73456301 ~ 73495084 (+) True G437327
TU494306 other upstream 2773455 72995499 ~ 72995735 (+) True G436588
TU500137 other downstream 1498629 77268212 ~ 77268766 (+) True G441903
TU500530 other downstream 1788747 77558330 ~ 77583227 (+) True G442273
TU501262 other downstream 2476256 78245839 ~ 78258456 (+) False LOC110524622
TU501263 other downstream 2476256 78245839 ~ 78258456 (+) False LOC110524622
TU501264 other downstream 2476256 78245839 ~ 78258456 (+) False LOC110524622

Expression Profile