RNA id: TU498599



Basic Information


Item Value
RNA id TU498599
length 313
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G440427
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75879642 ~ 75879954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACATTCTTATTCATCACTTATTATGTACTTttgcacactcagacgagagtgctctgaaatcggagtagatagtcAGAGTAAATTTGCAAACacaagagatatgctaactgggTAACAGTTGTTcaagttcagcatagctagctaactagctggcaaaacaattcacatttcttgctagctaaGCCAAAGACACCTGACTCTTTACCTATGTAGCCACCGAAAAAGGACATGAGGGAagaagtcagtcagtcattcaccCACTCCTGCAATTACATACAATTCtactagcagctagctagctaacgttaggtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU498233 lncRNA downstream 18799 75860620 ~ 75860843 (-) True G440081
TU498195 lncRNA downstream 42666 75836775 ~ 75836976 (-) True G440043
TU498192 lncRNA downstream 44138 75835263 ~ 75835504 (-) True G440040
TU498080 lncRNA downstream 117614 75761772 ~ 75762028 (-) True G439931
TU498078 lncRNA downstream 117934 75761496 ~ 75761708 (-) True G439929
TU498604 lncRNA upstream 444966 76324920 ~ 76342414 (-) True G440430
TU499088 lncRNA upstream 551145 76431099 ~ 76431450 (-) True G440899
TU499140 lncRNA upstream 588758 76468712 ~ 76468961 (-) True G440950
TU499155 lncRNA upstream 598870 76478824 ~ 76479026 (-) True G440965
TU499387 lncRNA upstream 683751 76563705 ~ 76566462 (-) True G441179
XM_021601424.2 mRNA downstream 135933 75740110 ~ 75743709 (-) True LOC110523006
XM_021604382.2 mRNA downstream 173176 75671713 ~ 75706466 (-) True rgs8
XM_021604380.2 mRNA downstream 180722 75671713 ~ 75698920 (-) False rgs8
XM_021604379.2 mRNA downstream 218970 75658532 ~ 75660672 (-) True LOC110524580
XM_021604378.2 mRNA downstream 255175 75613590 ~ 75624467 (-) True LOC110524579
XM_021604383.2 mRNA upstream 2275 75882229 ~ 75954489 (-) True LOC110524582
XM_036978427.1 mRNA upstream 408967 76288921 ~ 76318618 (-) False LOC110524583
XM_021604384.2 mRNA upstream 408967 76288921 ~ 76318655 (-) False LOC110524583
XM_036978426.1 mRNA upstream 408967 76288921 ~ 76324868 (-) True LOC110524583
XM_021604392.2 mRNA upstream 698289 76578243 ~ 76584083 (-) False LOC110524587
TU497923 other downstream 304073 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 614239 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 915946 74963460 ~ 74963696 (-) True LOC110523004
TU497050 other downstream 951845 74865259 ~ 74927797 (-) True G439002
TU495056 other downstream 2469303 73370608 ~ 73410339 (-) True LOC110524526
TU499371 other upstream 706504 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 1022428 76902382 ~ 76902771 (-) True G441483
TU499853 other upstream 1134045 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 1526788 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 1743345 77623299 ~ 77627214 (-) False G442381

Expression Profile