RNA id: TU499387


Basic Information

Item Value
RNA id TU499387
length 1591
lncRNA type antisense_over
GC content 0.44
exon number 5
gene id G441179
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76563705 ~ 76566462 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGCAAATAATTTAATGTCATCCTACATAAtcataactttttttttaacaagCATTGCAAAAGTCAGCATCCAGACAGTGACTGTGTGTTATAAATAGTACAACATGCAAATCTGAATGTATAAACATTCTAGCTCAGTAAGCAATCAGAAACATTCTGTATCAAATAAGTAGGAGTTAAGTTCAATATACAAAGTTGGACATAGACTATTCTTCTCTCTACAATTGCACAACTTAACCTATACTTCTCAATAGGTCATTCTTAAAAGATAGACAGTGAAAGAAGTCTTTAACTGCCTTACAAGTGTAAATATCAAAATGCCTTTCACAAAACTTGATTGATTTTAGAGACTAAACATTCATAGTGTAAAGGAGAGTATATTCTGTTTGGCCGGTATCCGCTGAATACATGCTCCTTCCTTCATTACATTCCTCCTGACCACGTAGGTTAGTACTCTAGTGAAAGTCCACCCTGCATCTCATGTCTTATCACAGTATCATAGGCTTCCTGttacgcgcacacagacacacacacacacgcgcgcacacacggacacactcTTCTCTGTCTTTATCAAGACAGGAAGCACCTCCGGTTGAGTGGGGACTGCATGGTTCTCTGACGTTGTGTTTCAGTTCAATCGTCATTCACTATGTGATTCATTCACTGTCAAAGACGATCTGATCACTTATGATACGACACGTCACTCCCAGAGTCACTGATAGGACAGCAGTATCCAGGTCAAACACGCATCACCGTAGAGTTCCCCATATCCTCTCTGCTTTTCCTTCTGTCTTTGCTTCTTTATTTTTCTCTTGGCTAATGCTGTTAGCAGAGTGTTTCAGGGTGTGGTCCTGCATTGTGGGAACCATGTTTTGTAGGGCATGGCCTGCCAGTCTCTCTGTGCTGGGTCAGCCTTCCATCCTGTAGAAGCCCAAACATTCCAGTTACTGTTTTCATGTTCTCCtgtcatcttctcctctcctatcatccCTTGACGGCGTCAGCGGCGAGGGACTCCAGGAGGGATCTGTAAATGTCTGAGCGCAGGAAGCGAGGGTACGAATCTCTCTCCATCAGCCCATAGACAATCTTCTGGGCATCGTCGAAGCATTGGAGGTTAGGAGTCTTCACAGCACTCTTGATCTGCTCCCTTGTGTAGTAGTCAATGTTAATCTCTTTAGGAGCCTCAGCCTTTATGAACTGCTCATAGATTTTCTTTGCCTTCGATGACATTCTGAACGATGACTTGATTTTCTTGTACTCCTCACACGTCAGCCAGAACTCAATGTTCTCATCGCTGAATTCAGACTTCAGAAAGGTTCTGAAGGTGGCCAGTCCATATTTAGACTCAAGGAGTCTCTCCAGTGACTGAGACCATTGTTGGGTATCTTCTAAACTTAGCCTGCTCTCAGATGTGGAGTGTGAGAACATGCATTGCAGTCGGCAAATAAAGTTCTTTCCCAGGTTCTTGTTCCTCCCCCTGTCGTCCTGCTCCATATTGAAGTGCTGTGTTTGTGTCAGTGTCTCTGTGATGATTAGGCTGGGCATGTTTTAACTccacactctctgtctcctggTGCTGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU499155 lncRNA downstream 84679 76478824 ~ 76479026 (-) True G440965
TU499140 lncRNA downstream 94744 76468712 ~ 76468961 (-) True G440950
TU499088 lncRNA downstream 132255 76431099 ~ 76431450 (-) True G440899
TU498604 lncRNA downstream 221291 76324920 ~ 76342414 (-) True G440430
TU498599 lncRNA downstream 683751 75879642 ~ 75879954 (-) True G440427
TU499399 lncRNA upstream 30880 76597342 ~ 76608244 (-) True G441190
TU499471 lncRNA upstream 130850 76697312 ~ 76697574 (-) True G441254
TU499448 lncRNA upstream 138182 76704644 ~ 76707910 (-) True G441231
TU499486 lncRNA upstream 163018 76729480 ~ 76729680 (-) True G441268
TU499665 lncRNA upstream 306361 76872823 ~ 76873048 (-) True G441446
XM_036978426.1 mRNA downstream 238837 76288921 ~ 76324868 (-) True LOC110524583
XM_021604384.2 mRNA downstream 245050 76288921 ~ 76318655 (-) False LOC110524583
XM_036978427.1 mRNA downstream 245087 76288921 ~ 76318618 (-) False LOC110524583
XM_021604383.2 mRNA downstream 609216 75882229 ~ 75954489 (-) True LOC110524582
XM_021601424.2 mRNA downstream 819996 75740110 ~ 75743709 (-) True LOC110523006
XM_021604392.2 mRNA upstream 11781 76578243 ~ 76584083 (-) False LOC110524587
XM_021604391.2 mRNA upstream 11787 76578249 ~ 76586678 (-) True LOC110524587
XM_021604394.2 mRNA upstream 20543 76587005 ~ 76588448 (-) False glrx2
XM_021604398.2 mRNA upstream 20543 76587005 ~ 76588861 (-) False glrx2
XM_021604395.2 mRNA upstream 20543 76587005 ~ 76588907 (-) False glrx2
TU497923 other downstream 988136 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 1298302 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 1600009 74963460 ~ 74963696 (-) True LOC110523004
TU497050 other downstream 1635908 74865259 ~ 74927797 (-) True G439002
TU495056 other downstream 3153366 73370608 ~ 73410339 (-) True LOC110524526
TU499371 other upstream 19996 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 335920 76902382 ~ 76902771 (-) True G441483
TU499853 other upstream 447537 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 840280 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 1056837 77623299 ~ 77627214 (-) False G442381

Expression Profile