RNA id: TU499448


Basic Information

Item Value
RNA id TU499448
length 2952
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G441231
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76704644 ~ 76707910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTTAGCAATTCCTTTATTGAGTTGCAATTGTCATACCTTAACATTCAAAATAGTTTAACTACACGAGACTCAAATTAAAGGGAACGTTCACCCAAATATCTACGTTTGTCAGATGATACCATGCAACAAAAAAGTGGTATTATGTTGAGGTGAATCCATATTTAACCGCATCGGTTGTGTAGAAGAACCCAAATGCATTAGGAGATATCTGCAGGTCCGAATCCCAAATGAATGGAAAAGATACGTGCCATATAACTAAATGTGCACCACCAATGGAATGCAAGAAAATAAGAACATTTTGACTGATTGAAAGGTGCAAAACAATTAAAACTGACCTGGCATGACCTGCATCACATTCTGGTAGCCTACAACCATATCAGTGGTTGTTGGCTAGTCCAAATGCTTGAAACATATTGTGAAATCACTAGACATACGGGACATGGTTTTATTTGAGTATGAATGCGTCATAGGGTTACGAACATGTGTTGAAAATGTCTGCTGAAAACAGTTAAATACTTTACTGACACATTTATGACCAAAAGACTAGGATAGTAAACATATACATGCACAGTCATTTAGTTAGCAGCCAAGACCATATTATAGCACATCAATTATGCATAGGAGTTGTCATATCaagggtgcacattttgttttttgccctaacactacacagccaaatcaaattatcaaagcttgatgattagttgattatttgaatcagctgtgtagtgctagtgcaaaaaaacaaacgtgaaccccttggggtcccgaggaccgagtttgggaaaccctgcaatAGTGTTTTATAATCATCCTTGTTGATGGATTCTTCAGTCTGTTCCGTGTGGTtctgacagtacagtacacagtactaCCACAATAGGGGCATAGGCAGGCTTGTTGACTGGGTTGTCGCATTTGTCGGAGAGTTTAGTGGTTCCTTTCACACAGCTGCAGGTAATATACTGAATGAAATATACAAAACAAAAGACCAAAGTAAAAATCGAGAAAGGACCACCGAAACTGCCACATATAGTTGCTGTCTGATGAAAACCTTAACATTTTCTTTTGTACATTTATTGAAAGCATTAACTCCCCTCAATGTACTCTGAACATTTCATGACAAAACAATGTATTCAAAATAGCTTATGAAGTTATGTTCAAACACACTTTTCAGGGAATAGAAAAAAATTACCCTATTTACCCAATAACGAACATACAATTATGAGAGGTTTCCATCAGACAGCCATGATATGGACATTCCTGGATTCAGGTAAAACGTAGAGAAATGTTATGGaacaccgtttgggtctttgtgtgtcaaaaaagatacacgtcaaataacactatttgacacgttaaataagcttttaaatttgacatgtcaaataacacagtttaattgtagaatgttgtgttggaccgcaacttctggggtagctggctagctttagctcggtaacgtaaactcactcacttttgtacatcgccctggtccgtacaattgaccttattttagcgccccaaaaatgtaatacttccagatcaactgtaatgtcaataccattgtaaagcacaatttctcctctttccaacagaatcaattacatgacccccatgctgcccgtttctgcataattcaagaagacaatgagccccgtcgggtctttttaaaaatggcgggtgaggaagcgaaactaatgtgtgatagtgagaaggagagatgttgtgtgggaaaattgctttatgtgtgctgtacgttacgacatgacacgtcacgatgtaacggCGGGTCCGTTTTTTTCAACtcttctccaatactatagagtcattaccatgtcgatcaacgcttgaatagaaacctagttcacacccctgattttgacgtcaacacagtcactacagtcccattcgttttctttgtagcctcgtttgaatgttgctgttgcgcacatttgtacggaatggggtgagtttacgttacctAGCTaacaccaatacaaccagcctgaaaacaatagaagtagaaactgcagtcatttttaAAATTCTTAGCAATAATTTAGGGATTCTTGTGAGTAattattagctaggtagccacttgttgttcaccTATTACAACTGAACTTCAGTTCAGCTACTAAACCCTGTTGCCAAAAGCTAACGTtgtaagcagccagctagcttcattaGGCTCGACctgaccgggttatgtgttgtgaagctagcctcaataaggattaggcacaattgTGGAATTTGCGATTTGCCTTCAAAATAATAGTACCtatttgaaagtgatgcagaagtctgcaattggtggaatcatgccatatttagactagatcatgttaaacaaggttggaatgtgaagcaattaaattgggtatcagtctactcggtgacacccatagaacacaactgtgaagagtttacgcaAGTATTACTGTTGTAGCTCTTATTGCAGgagtgtgactgtgtgaaatcacctcccTAGTCAGCCTATTGtttgtattgacattcatattgcactatacagctttacctaaggattggggatcaaagaaatggggtatcagtctactcaatacaTTCTTTCCCCAACgtcctcctcagagttatcagGCTCAAATATCCACACAGTATTATTTTTCCtctggaatagtgttcaatacacataggttgacaataaatgtgtCTCAATTCACAGTTTCAGAGTCCCACAATAAGAGTTACGATGCTAATGTTCTCTgtgtgtcactgagtagactgataccccatgtcattgatccacaatccttaggtaaggctgtacagtgaaataagtatgccccaaTGAAATTATAAAGTctaatacatccagtgtgatttcaacaaatttttgtcaaattaacaaattattgtattttgttgattttatatacCATTCCAAACTCGTTTATcatgatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU499471 lncRNA downstream 7070 76697312 ~ 76697574 (-) True G441254
TU499399 lncRNA downstream 96400 76597342 ~ 76608244 (-) True G441190
TU499387 lncRNA downstream 138182 76563705 ~ 76566462 (-) True G441179
TU499155 lncRNA downstream 225618 76478824 ~ 76479026 (-) True G440965
TU499140 lncRNA downstream 235683 76468712 ~ 76468961 (-) True G440950
TU499486 lncRNA upstream 21570 76729480 ~ 76729680 (-) True G441268
TU499665 lncRNA upstream 164913 76872823 ~ 76873048 (-) True G441446
TU499683 lncRNA upstream 176228 76884138 ~ 76884533 (-) True G441464
TU499699 lncRNA upstream 193211 76901121 ~ 76901378 (-) True G441480
TU499703 lncRNA upstream 195196 76903106 ~ 76903566 (-) True G441484
XM_021604396.2 mRNA downstream 115664 76587005 ~ 76588980 (-) True glrx2
XM_021604397.2 mRNA downstream 115667 76587005 ~ 76588977 (-) False glrx2
XM_021604395.2 mRNA downstream 115737 76587005 ~ 76588907 (-) False glrx2
XM_021604398.2 mRNA downstream 115783 76587005 ~ 76588861 (-) False glrx2
XM_021604394.2 mRNA downstream 116196 76587005 ~ 76588448 (-) False glrx2
XM_021604409.2 mRNA upstream 284081 76991991 ~ 76996276 (-) True LOC110524596
XM_021604411.2 mRNA upstream 474004 77181914 ~ 77215782 (-) False LOC110524597
XM_021604410.2 mRNA upstream 474005 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA upstream 475139 77183049 ~ 77215911 (-) True LOC110524597
XM_021604412.2 mRNA upstream 568995 77276905 ~ 77402910 (-) False LOC110524600
TU499371 other downstream 114274 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1129075 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 1439241 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 1740948 74963460 ~ 74963696 (-) True LOC110523004
TU497050 other downstream 1776847 74865259 ~ 74927797 (-) True G439002
TU499702 other upstream 194472 76902382 ~ 76902771 (-) True G441483
TU499853 other upstream 306089 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 698832 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 915389 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 1373835 78081745 ~ 78082010 (-) True G442807

Expression Profile