RNA id: TU499711



Basic Information


Item Value
RNA id TU499711
length 269
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G441492
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76908872 ~ 76909140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtttaaaaatacaTAAAGTTGTAttgcaaaagtagtttgaaatgttttggcaaagtttacaggtaacttttgagatattttgtagtgacgttgcacaaattggaagctgtttttttctggatcaaacgcgccaaataaattgacattttggatatatatcggcggaattaatcgaacaaaaggaccatttgtgatgtcaaaggtaaggcatgatttatattttatttctgcattttgtgtggtgcctgcagggttgaaatatgctactc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU499703 lncRNA downstream 5306 76903106 ~ 76903566 (-) True G441484
TU499699 lncRNA downstream 7494 76901121 ~ 76901378 (-) True G441480
TU499683 lncRNA downstream 24339 76884138 ~ 76884533 (-) True G441464
TU499665 lncRNA downstream 35824 76872823 ~ 76873048 (-) True G441446
TU499486 lncRNA downstream 179192 76729480 ~ 76729680 (-) True G441268
TU499712 lncRNA upstream 836 76909976 ~ 76910181 (-) True G441493
TU499738 lncRNA upstream 23280 76932420 ~ 76932644 (-) True G441519
TU499788 lncRNA upstream 64293 76973433 ~ 76973659 (-) True G441568
TU499805 lncRNA upstream 77557 76986697 ~ 76987021 (-) True G441585
TU499811 lncRNA upstream 78176 76987316 ~ 76987809 (-) True G441591
XM_021604396.2 mRNA downstream 319892 76587005 ~ 76588980 (-) True glrx2
XM_021604397.2 mRNA downstream 319895 76587005 ~ 76588977 (-) False glrx2
XM_021604395.2 mRNA downstream 319965 76587005 ~ 76588907 (-) False glrx2
XM_021604398.2 mRNA downstream 320011 76587005 ~ 76588861 (-) False glrx2
XM_021604394.2 mRNA downstream 320424 76587005 ~ 76588448 (-) False glrx2
XM_021604409.2 mRNA upstream 82851 76991991 ~ 76996276 (-) True LOC110524596
XM_021604411.2 mRNA upstream 272774 77181914 ~ 77215782 (-) False LOC110524597
XM_021604410.2 mRNA upstream 272775 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA upstream 273909 77183049 ~ 77215911 (-) True LOC110524597
XM_021604412.2 mRNA upstream 367765 77276905 ~ 77402910 (-) False LOC110524600
TU499702 other downstream 6101 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 318502 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1333303 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 1643469 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 1945176 74963460 ~ 74963696 (-) True LOC110523004
TU499853 other upstream 104859 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 497602 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 714159 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 1172605 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 2055491 78964631 ~ 78966029 (-) True G444001

Expression Profile