RNA id: TU499811



Basic Information


Item Value
RNA id TU499811
length 494
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G441591
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76987316 ~ 76987809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTTCTACAATTCTACCATTATTGTCATGGTGTGGAGAGATGTTTTTGTagttttaaagctcatttcctgcaattatacacattttgaaatgatttatgctatgttaatatgatatctgagtgagaatgactaacaaaatcaatgggggcccctggAGGTTATGGTCCCTGGGCATATTCCCTGCAGGTCTGGTTcgtattcggccatgattactacaagtttagatagttggctagactaactaccaacctgatttaaaaaaagcttacATGGCTAATATAGTGACATGACAAGAGAAGAACAGCTATTGCACAACCAAATCAAAATTGCACCCAGTGTATTCTACTATTGTTACTCTTGACAGTAAATTGAGATCCCGactgagtcccccccccccaaattaaaaaataaataaaaacaataattgGGCCTTGGGCCCCCTGGAGGCCGGGCCCCTAAGCGAAAGCTTATGTTGCTTATGCCTGGAACCGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU499805 lncRNA downstream 295 76986697 ~ 76987021 (-) True G441585
TU499788 lncRNA downstream 13657 76973433 ~ 76973659 (-) True G441568
TU499738 lncRNA downstream 54672 76932420 ~ 76932644 (-) True G441519
TU499712 lncRNA downstream 77135 76909976 ~ 76910181 (-) True G441493
TU499711 lncRNA downstream 78176 76908872 ~ 76909140 (-) True G441492
TU499813 lncRNA upstream 2346 76990155 ~ 76990361 (-) True G441593
TU499815 lncRNA upstream 3585 76991394 ~ 76991596 (-) True G441595
TU499828 lncRNA upstream 11079 76998888 ~ 76999109 (-) True G441607
TU499831 lncRNA upstream 13586 77001395 ~ 77001834 (-) True G441610
TU499852 lncRNA upstream 25200 77013009 ~ 77020135 (-) True G441629
XM_021604396.2 mRNA downstream 398336 76587005 ~ 76588980 (-) True glrx2
XM_021604397.2 mRNA downstream 398339 76587005 ~ 76588977 (-) False glrx2
XM_021604395.2 mRNA downstream 398409 76587005 ~ 76588907 (-) False glrx2
XM_021604398.2 mRNA downstream 398455 76587005 ~ 76588861 (-) False glrx2
XM_021604394.2 mRNA downstream 398868 76587005 ~ 76588448 (-) False glrx2
XM_021604409.2 mRNA upstream 4182 76991991 ~ 76996276 (-) True LOC110524596
XM_021604411.2 mRNA upstream 194105 77181914 ~ 77215782 (-) False LOC110524597
XM_021604410.2 mRNA upstream 194106 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA upstream 195240 77183049 ~ 77215911 (-) True LOC110524597
XM_021604412.2 mRNA upstream 289096 77276905 ~ 77402910 (-) False LOC110524600
TU499702 other downstream 84545 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 396946 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1411747 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 1721913 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 2023620 74963460 ~ 74963696 (-) True LOC110523004
TU499853 other upstream 26190 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 418933 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 635490 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 1093936 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1976822 78964631 ~ 78966029 (-) True G444001

Expression Profile