RNA id: TU499889



Basic Information


Item Value
RNA id TU499889
length 205
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G441666
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77060135 ~ 77060339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgcctgtacttagctccATCCCGTTTCTTTttttcctgaaaaactccccagtatttACCGATGTCAAgtatacccataccatgatgcagacaccaccatgcttgaaaataaggaggcaattactcagtgatgtgttggatttgccctaaacataaaGCTTTGCATTTAGACCAAAAATATATTCCTTTACGGTATTACTTTAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU499888 lncRNA downstream 2 77056549 ~ 77060133 (-) True G441665
TU499875 lncRNA downstream 17802 77042103 ~ 77042333 (-) True G441652
TU499856 lncRNA downstream 34955 77018026 ~ 77025180 (-) True G441633
TU499854 lncRNA downstream 36111 77016752 ~ 77024024 (-) True G441631
TU499852 lncRNA downstream 40000 77013009 ~ 77020135 (-) True G441629
TU499897 lncRNA upstream 5501 77065840 ~ 77066183 (-) True G441674
TU499926 lncRNA upstream 25760 77086099 ~ 77086389 (-) True G441703
TU499986 lncRNA upstream 91059 77151398 ~ 77151743 (-) True G441763
TU499988 lncRNA upstream 93751 77154090 ~ 77154391 (-) True G441765
TU500013 lncRNA upstream 109111 77169450 ~ 77169810 (-) True G441790
XM_021604409.2 mRNA downstream 63859 76991991 ~ 76996276 (-) True LOC110524596
XM_021604396.2 mRNA downstream 471155 76587005 ~ 76588980 (-) True glrx2
XM_021604397.2 mRNA downstream 471158 76587005 ~ 76588977 (-) False glrx2
XM_021604395.2 mRNA downstream 471228 76587005 ~ 76588907 (-) False glrx2
XM_021604398.2 mRNA downstream 471274 76587005 ~ 76588861 (-) False glrx2
XM_021604411.2 mRNA upstream 121575 77181914 ~ 77215782 (-) False LOC110524597
XM_021604410.2 mRNA upstream 121576 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA upstream 122710 77183049 ~ 77215911 (-) True LOC110524597
XM_021604412.2 mRNA upstream 216566 77276905 ~ 77402910 (-) False LOC110524600
XM_021604413.2 mRNA upstream 216566 77276905 ~ 77402910 (-) True LOC110524600
TU499853 other downstream 38760 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 157364 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 469765 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1484566 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 1794732 75263473 ~ 75265403 (-) True G439594
TU500354 other upstream 346403 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 562960 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 1021406 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1904292 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 2162801 79223140 ~ 79237461 (-) False LOC110524635

Expression Profile