RNA id: TU500258


Basic Information

Item Value
RNA id TU500258
length 1066
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G442021
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77269860 ~ 77272749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACCAGAGCTCTTGCATCAAAATGAAatagttaaaggcccagtgctgtcaaaaacatgattgtcctgtgttttatatatatctccacactatgagtttggaacaatactgtgaaattgtgaaaattatgataatgtccttttagtgtaagaactgtttgaaaagaccgcctgaaatttcagcctgttttgttgggatggagttttgtcctgcctggtgacatcaccaggcagtaaattagttaatagaccaaaaGGAAACAGTTCCAAACATCTCAGCCAATAACAGCTTGTTTTCAGTGTTCCCCTCTCAACTCAGACCACACCCAGACAGTCAAAATTATTGGtagagaaattgctctttgctaagaagctatttttgtttctttttggccATTTTACGTTAagacaatcacagtaaggtacttaactgttacccagaaatgattggATATTGAGACAAAAGCATCTGCATTGGACCTTAAACATTGCCATATACTGGCTCCATCCTGGAATCTTAATGGTGTACTTGTTCTGACAAACATTCTACTACTTATTAATGAACTCATCCTGATTATTTGTGATCTCAAGTAAAACATTTattgtttctctctgtgtatatAGACATATGGGCACTTAGATGTATATAATGCATGTTAGCAATGAGTACATTGATTGTGAGGGACAAACAACTGTGTTGAGTTGTATTGTGTTGCTTCAGTTGTAATATCATGTGCCATGGAAAGCTAATGCAAAGCCAAAAGAGTCTCACTGTCATAGAATCCATGAATGTTCTTTGGTGTGTCTTTACTTTTTGTGTTTGGGGGGTTTGAATAGAAGTACATGTTTTTTTAATAGGAGAAAGGGGATGTTTTTTGGAAGGAAAATATGTTTGGAAGAGAAATAGAAAACCCAATACACTAGGAAAATTGGCATTAGACCCTACTTATGTATAATGTATTTTAAGTGTTGCTTGCTGCAGATCCTGATAGAGAAGGTATGTTATCTCAAAGCTTTGAGTCTTAGTTGTATGTTAACATGTATATATGTCTCCACAGAGGTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500247 lncRNA downstream 13971 77255726 ~ 77255976 (-) True G442013
TU500246 lncRNA downstream 14415 77255183 ~ 77255532 (-) True G442012
TU500129 lncRNA downstream 21449 77248270 ~ 77248498 (-) True G441895
TU500060 lncRNA downstream 95058 77174511 ~ 77174889 (-) True G441828
TU500013 lncRNA downstream 100137 77169450 ~ 77169810 (-) True G441790
TU500256 lncRNA upstream 477 77271489 ~ 77272749 (-) True G442021
TU500259 lncRNA upstream 1956 77272968 ~ 77273997 (-) True G442022
TU500260 lncRNA upstream 4833 77275845 ~ 77276048 (-) True G442023
TU500267 lncRNA upstream 17552 77288564 ~ 77288787 (-) True G442030
TU500269 lncRNA upstream 20231 77291243 ~ 77291489 (-) True G442032
XM_021604410.2 mRNA downstream 54036 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA downstream 54036 77183049 ~ 77215911 (-) True LOC110524597
XM_021604411.2 mRNA downstream 54165 77181914 ~ 77215782 (-) False LOC110524597
XM_021604409.2 mRNA downstream 273671 76991991 ~ 76996276 (-) True LOC110524596
XM_021604396.2 mRNA downstream 680967 76587005 ~ 76588980 (-) True glrx2
XM_021604412.2 mRNA upstream 5893 77276905 ~ 77402910 (-) False LOC110524600
XM_021604413.2 mRNA upstream 5893 77276905 ~ 77402910 (-) True LOC110524600
XM_021604427.2 mRNA upstream 244106 77515118 ~ 77527861 (-) True LOC110524605
XM_021604430.2 mRNA upstream 277848 77548860 ~ 77556868 (-) False LOC110524607
XM_036978448.1 mRNA upstream 287310 77558322 ~ 77594883 (-) False LOC110524608
TU499853 other downstream 248572 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 367176 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 679577 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1694378 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 2004544 75263473 ~ 75265403 (-) True G439594
TU500354 other upstream 135730 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 352287 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 810733 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1693619 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1952128 79223140 ~ 79237461 (-) False LOC110524635

Expression Profile