RNA id: TU500272


Basic Information

Item Value
RNA id TU500272
length 271
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G442035
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77293799 ~ 77333276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatgagggggaaaaaatccagaaaatcacattgtaggatttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacatgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500271 lncRNA downstream 382 77293207 ~ 77293417 (-) True G442034
TU500269 lncRNA downstream 2310 77291243 ~ 77291489 (-) True G442032
TU500267 lncRNA downstream 5012 77288564 ~ 77288787 (-) True G442030
TU500260 lncRNA downstream 17751 77275845 ~ 77276048 (-) True G442023
TU500259 lncRNA downstream 19802 77272968 ~ 77273997 (-) True G442022
TU500305 lncRNA upstream 9241 77342517 ~ 77342750 (-) True G442068
TU500317 lncRNA upstream 22139 77355415 ~ 77355646 (-) True G442078
TU500326 lncRNA upstream 40247 77373523 ~ 77373769 (-) True G442087
TU500335 lncRNA upstream 52341 77385617 ~ 77385834 (-) True G442096
TU500355 lncRNA upstream 77011 77410287 ~ 77410653 (-) True G442116
XM_021604410.2 mRNA downstream 77888 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA downstream 77888 77183049 ~ 77215911 (-) True LOC110524597
XM_021604411.2 mRNA downstream 78017 77181914 ~ 77215782 (-) False LOC110524597
XM_021604409.2 mRNA downstream 297523 76991991 ~ 76996276 (-) True LOC110524596
XM_021604396.2 mRNA downstream 704819 76587005 ~ 76588980 (-) True glrx2
XM_021604427.2 mRNA upstream 181842 77515118 ~ 77527861 (-) True LOC110524605
XM_021604430.2 mRNA upstream 215584 77548860 ~ 77556868 (-) False LOC110524607
XM_036978448.1 mRNA upstream 225046 77558322 ~ 77594883 (-) False LOC110524608
XM_036978447.1 mRNA upstream 225046 77558322 ~ 77600103 (-) False LOC110524608
XM_021604431.2 mRNA upstream 225046 77558322 ~ 77617708 (-) False LOC110524608
TU499853 other downstream 272424 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 391028 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 703429 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1718230 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 2028396 75263473 ~ 75265403 (-) True G439594
TU500354 other upstream 73466 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 290023 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 748469 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1631355 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1889864 79223140 ~ 79237461 (-) False LOC110524635

Expression Profile