RNA id: TU500335


Basic Information

Item Value
RNA id TU500335
length 218
lncRNA type intronic
GC content 0.54
exon number 1
gene id G442096
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77385617 ~ 77385834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatggtcaaataataggtctgggacaggtagcacgtccggtgaacaggtcaggattccatagccgcaggcagaacagttgaaactggagcagcagcacggccaggtggactgcggacagcaaggagtcatcatgccaggtagtcctgaggcatggccctagggctcaggtcctccgagagagagaaagaaagagagaaagaaagaattagagagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500326 lncRNA downstream 11848 77373523 ~ 77373769 (-) True G442087
TU500317 lncRNA downstream 29971 77355415 ~ 77355646 (-) True G442078
TU500305 lncRNA downstream 42867 77342517 ~ 77342750 (-) True G442068
TU500272 lncRNA downstream 52341 77293799 ~ 77333276 (-) True G442035
TU500271 lncRNA downstream 92200 77293207 ~ 77293417 (-) True G442034
TU500355 lncRNA upstream 24453 77410287 ~ 77410653 (-) True G442116
TU500376 lncRNA upstream 36386 77422220 ~ 77422477 (-) True G442137
TU500380 lncRNA upstream 37518 77423352 ~ 77423695 (-) True G442141
TU500426 lncRNA upstream 69078 77454912 ~ 77455575 (-) True G442173
TU500445 lncRNA upstream 83784 77469618 ~ 77469838 (-) True G442191
XM_021604410.2 mRNA downstream 169706 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA downstream 169706 77183049 ~ 77215911 (-) True LOC110524597
XM_021604411.2 mRNA downstream 169835 77181914 ~ 77215782 (-) False LOC110524597
XM_021604409.2 mRNA downstream 389341 76991991 ~ 76996276 (-) True LOC110524596
XM_021604396.2 mRNA downstream 796637 76587005 ~ 76588980 (-) True glrx2
XM_021604427.2 mRNA upstream 129284 77515118 ~ 77527861 (-) True LOC110524605
XM_021604430.2 mRNA upstream 163026 77548860 ~ 77556868 (-) False LOC110524607
XM_036978448.1 mRNA upstream 172488 77558322 ~ 77594883 (-) False LOC110524608
XM_036978447.1 mRNA upstream 172488 77558322 ~ 77600103 (-) False LOC110524608
XM_021604431.2 mRNA upstream 172488 77558322 ~ 77617708 (-) False LOC110524608
TU499853 other downstream 364242 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 482846 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 795247 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1810048 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 2120214 75263473 ~ 75265403 (-) True G439594
TU500354 other upstream 20908 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 237465 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 695911 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1578797 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1837306 79223140 ~ 79237461 (-) False LOC110524635

Expression Profile