RNA id: TU500426


Basic Information

Item Value
RNA id TU500426
length 585
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G442173
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77454912 ~ 77455575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCTGGCTCAGTGGATTTCAAAATGCAGTGTGTAGGAAGAGATTCAAAAAAGTGTACAATATTGAACCATCACTGTTGTTCTATACAGGAATTCTCAAATATCTGAGTAAATaatcaaaaaaatacaaaaataacaatattttccaTAAGACAACGCTACCTGATAGAGAGGGTCTGtggttacgtcccaaatgacaAGGGTGTGGGACAAGAGGGATCCCAAAGGATTGTGTCCAAAATAGTGAGGAGCAATCCAGTGACACATATAGCAGACAAACGCCACAGTTCAACCTCAGAAGACATGGCACAACTTTACAACGCCGCAAAACATTATACAACATTACATTAAAAGGCACCACACAATACAAACTCACAAGGAGATTTTGCCACACATTTGTAATGTTGTAACCTACAAACTTTAAGGCGGATGTCATGTGCAAAAGAGTACAGAATGTGTCAAACATACTACTGTACTACTCAGTGTCCTCTCAATAAAATGTGCTTTTTTTCTCTTTCACTTTCTTttgacattaaaaaaaatatctgaaatgtGCAAAGATTTAAAGAATGATTGCATTGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500380 lncRNA downstream 31217 77423352 ~ 77423695 (-) True G442141
TU500376 lncRNA downstream 32435 77422220 ~ 77422477 (-) True G442137
TU500355 lncRNA downstream 44259 77410287 ~ 77410653 (-) True G442116
TU500335 lncRNA downstream 69078 77385617 ~ 77385834 (-) True G442096
TU500326 lncRNA downstream 81143 77373523 ~ 77373769 (-) True G442087
TU500445 lncRNA upstream 14043 77469618 ~ 77469838 (-) True G442191
TU500463 lncRNA upstream 28616 77484191 ~ 77484428 (-) True G442209
TU500509 lncRNA upstream 77943 77533518 ~ 77533726 (-) True G442253
TU500526 lncRNA upstream 95457 77551032 ~ 77551354 (-) True LOC110524607
TU500660 lncRNA upstream 167724 77623299 ~ 77627214 (-) True G442381
XM_021604412.2 mRNA downstream 52002 77276905 ~ 77402910 (-) False LOC110524600
XM_021604413.2 mRNA downstream 52002 77276905 ~ 77402910 (-) True LOC110524600
XM_021604410.2 mRNA downstream 239001 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA downstream 239001 77183049 ~ 77215911 (-) True LOC110524597
XM_021604411.2 mRNA downstream 239130 77181914 ~ 77215782 (-) False LOC110524597
XM_021604427.2 mRNA upstream 59543 77515118 ~ 77527861 (-) True LOC110524605
XM_021604430.2 mRNA upstream 93285 77548860 ~ 77556868 (-) False LOC110524607
XM_036978448.1 mRNA upstream 102747 77558322 ~ 77594883 (-) False LOC110524608
XM_036978447.1 mRNA upstream 102747 77558322 ~ 77600103 (-) False LOC110524608
XM_021604431.2 mRNA upstream 102747 77558322 ~ 77617708 (-) False LOC110524608
TU500354 other downstream 47777 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 433537 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 552141 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 864542 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1879343 75571249 ~ 75575569 (-) True G439788
TU500657 other upstream 167724 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 626170 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1509056 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1767565 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 1768428 79224003 ~ 79225868 (-) True LOC110524635

Expression Profile