RNA id: TU500995


Basic Information

Item Value
RNA id TU500995
length 1370
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G442643
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77867288 ~ 77868657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTAATCACTTGAAATAGGAAATATATCCACAAAGACAGTACATACTAGAGACCAAAGTAGCATCCAGTATGTGTCACAGAGAAAAATAAACAAGTTTTTCTTTAAAACTGTAAAATCCATTTGCAACATGAATTATTAAGTTGGCAAAAATCAATGCAACACATGCATCAAAATAGCATTGGCCTTTCATTGTAAATGTATATGCAGTGACTTAACAGCGAGAAGAAGCAAGTGCAGAAACACATCATACAGGAACACACAACTTTAAGCGAGCTTTCAAAGCCACACCGAATAtaatctcttgtggacagacTACTTAATGTAAATAGTATTTGACATGAGATTTTCAATTGTAGGTTGCCAAGATTACACAGAATATGGAGGCAAATAGCCTACTATGAGGGGACGTTTCAGTTGGTGCTGCCATCTGTCTCTATATATAGCAGTCTATAGTAATTATAGGCTTTAACCCACTGGTATAAGAGCAACTTATTGTATTGCCAATAATGATACTGACAGACAAGCACTTCAAAGATGTGCTCCATTCATCCACTGCGGATGTATTGATTCAGTTATTCACAGTATTAGTATAGTGTTGTTTGAAGAGTGTGGCTAAAAAGTAGTGGTGAAATGTCGAAACGAGACTACTTTAATACTAAGGCCCTGGCTGGTTaagctgggtcatgttcatttggTAGAAAACGAAGCGAACCAGGTAtgtactacctgaacttgtctaATTGTTTTAGTTTTCGGTTTTGCTATTGTccgccctaatgaacacgaccatgGTCTCCGAGTTGCCTGTGACAGTCACGTGCacagacaaaaaaaatacattctcCCAAACACACAATAACAATTATTATTCAACGCATGACCATTCAGAGAGTTGAAAAGAAGACAATGGAGCAGCTATTGTAAACAAGGAATGTTCACACTCAAGAAGAGATCATAATAACAGTTGTCACAAATTTCACGATGGATCACAGAATCCCTGTCAGAATAGAAGTCATACATCTATCAATAAAAAGTTATTACAGTGAATCACTTTAAAAGCACTGGCAATAAAATACAAATCAGAAAACCTTTACATTTCTAGCCTGGTACCAGATATGTCTGTGCTCTTGCTTACTCCATTGATGTCCTTGTCAAGACAGTTTTTATCTTTGTTTGCCACTACAATGTGTTAAGGAGTTGGCACGATAGCACAAACAGATTAGCACCCAGTTTCCTCTGGTGCTGGTACAGATGTAGCGTCTTAATAACAGTttttcacagcaggaaaataatcctgtagcaacaggaaatgtgaatcattatgtggattatagttaatggacatttttgataCATTTTTAGTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500957 lncRNA downstream 33743 77758822 ~ 77833545 (-) False G442620
TU500971 lncRNA downstream 37107 77828733 ~ 77830181 (-) True G442620
TU500959 lncRNA downstream 37462 77828733 ~ 77829826 (-) False G442620
TU500933 lncRNA downstream 38209 77779636 ~ 77829079 (-) False G442620
TU500946 lncRNA downstream 96854 77758822 ~ 77770434 (-) False G442620
TU500996 lncRNA upstream 1711 77870368 ~ 77871055 (-) True G442644
TU501002 lncRNA upstream 12568 77881225 ~ 77881951 (-) False G442649
TU501003 lncRNA upstream 12568 77881225 ~ 77881951 (-) True G442649
TU501021 lncRNA upstream 33125 77901782 ~ 77902328 (-) True G442666
TU501019 lncRNA upstream 34459 77903116 ~ 77908865 (-) True G442664
XM_036978450.1 mRNA downstream 225139 77627457 ~ 77642149 (-) True LOC110524609
XM_021604434.2 mRNA downstream 227494 77627457 ~ 77639794 (-) False LOC110524609
XM_021604432.2 mRNA downstream 249577 77558322 ~ 77617711 (-) True LOC110524608
XM_021604431.2 mRNA downstream 249580 77558322 ~ 77617708 (-) False LOC110524608
XM_021604443.2 mRNA upstream 3108 77871765 ~ 77874843 (-) True gadd45ab
XM_021604446.2 mRNA upstream 56558 77925215 ~ 77939001 (-) False znf648
XM_021604447.2 mRNA upstream 115087 77983744 ~ 77987655 (-) True glulb
XM_021604453.2 mRNA upstream 371111 78239768 ~ 78245830 (-) True LOC110524621
XM_021604464.2 mRNA upstream 514348 78383005 ~ 78387067 (-) True hyi
TU500657 other downstream 240074 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 460153 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 845913 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 964517 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 1276918 76586458 ~ 76590370 (-) True G441168
TU501172 other upstream 213088 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1095974 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1354483 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 1355346 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 1862330 79730987 ~ 79731536 (-) True G444691

Expression Profile