RNA id: TU501003



Basic Information


Item Value
RNA id TU501003
length 565
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G442649
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77881225 ~ 77881951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttttttaaatactttatttgtAAGTTTTCAAATTGAGACATAAGTAACAGTCAGTTTCTGTGTACAAACCTTGAGTGGGGTCTGGAGTGTTGtggctctggtctgatgtaactcATCGTGGAATGGGGTCTGTCGTAAGCTGTTCTGGAGTGGGGAGTGCTGTAAGAGTTGAGAGAGAACTCTAGAGGTGGTCTGGAAGGGGGAGGGCTGGTGAGGTAGACCCTGTAGCGAGGGTCCTGGTGGGAccactgcctctccctctccctggggtCCGGTGGTGGTGGGTAGTGCCCAGTGATAGCGTCCCCAACATTTGGTGGTGGTGGGTAGTGCCCGGGTCCAGTCCCCTGGTGAGGGTGAGCAGGCCTATGgtaatcctctctctccctggggtCCGGTGGTGGTGGGTAGTGCCCAGGTCCAGTCCCCTGGTGAGGGTGAGCAGGCCTATGgtagtcctctctctccctgggtctctGTGGGTGACGACCAGGGCCTGGCTCGGTCCAGTGGGGACTTCTGGGGTCCATGATGACCACTCTTTATGTTGAGAGGAGAATGCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU500996 lncRNA downstream 10170 77870368 ~ 77871055 (-) True G442644
TU500995 lncRNA downstream 12568 77867288 ~ 77868657 (-) True G442643
TU500971 lncRNA downstream 51044 77828733 ~ 77830181 (-) True G442620
TU500959 lncRNA downstream 51399 77828733 ~ 77829826 (-) False G442620
TU500933 lncRNA downstream 52146 77779636 ~ 77829079 (-) False G442620
TU501021 lncRNA upstream 19831 77901782 ~ 77902328 (-) True G442666
TU501019 lncRNA upstream 21165 77903116 ~ 77908865 (-) True G442664
TU501027 lncRNA upstream 32974 77914925 ~ 77938931 (-) True znf648
TU501040 lncRNA upstream 61322 77943273 ~ 77943849 (-) True G442676
TU501044 lncRNA upstream 71124 77953075 ~ 77953321 (-) True G442680
XM_021604443.2 mRNA downstream 6382 77871765 ~ 77874843 (-) True gadd45ab
XM_036978450.1 mRNA downstream 239076 77627457 ~ 77642149 (-) True LOC110524609
XM_021604434.2 mRNA downstream 241431 77627457 ~ 77639794 (-) False LOC110524609
XM_021604432.2 mRNA downstream 263514 77558322 ~ 77617711 (-) True LOC110524608
XM_036978449.1 mRNA downstream 263517 77558322 ~ 77617708 (-) False LOC110524608
XM_021604446.2 mRNA upstream 43264 77925215 ~ 77939001 (-) False znf648
XM_021604447.2 mRNA upstream 101793 77983744 ~ 77987655 (-) True glulb
XM_021604453.2 mRNA upstream 357817 78239768 ~ 78245830 (-) True LOC110524621
XM_021604464.2 mRNA upstream 501054 78383005 ~ 78387067 (-) True hyi
XM_021604478.2 mRNA upstream 1337202 79219153 ~ 79226639 (-) False LOC110524635
TU500657 other downstream 254011 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 474090 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 859850 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 978454 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 1290855 76586458 ~ 76590370 (-) True G441168
TU501172 other upstream 199794 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1082680 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1341189 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 1342052 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 1849036 79730987 ~ 79731536 (-) True G444691

Expression Profile