RNA id: TU501607


Basic Information

Item Value
RNA id TU501607
length 495
lncRNA type intronic
GC content 0.50
exon number 1
gene id G443165
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 78336272 ~ 78336766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accggagagcatgccctccgatttgacacactgaactctgtctgcaaagtagttggtgaaccaggcaaggcagtcatcagaaaaaccgaggctactgagtctgccgataagaatatggtgattgacagagtcgaaagccttggcaaggtcgatgaagacggctgcacagtactgtcttttatcgatggcggttatgatatcgtttagtaccttgagcgtggctgaggtgcacccgtgaccggctctgaaaccagattgcacagcggagaaggtacggtgggatttgagatggtcagtgacctgtttgttgacttggctttcgaagaccttagataggcagggcaggatggatataggtctgtaacagtttgggtaaagggtgtctccccctttgaagagggggatgactgcggcagctttccaatccttggggatctcagacgatatgaaagagaggttgaacaggctggtaatagtgttacctagcctcagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501606 lncRNA downstream 354 78335477 ~ 78335918 (-) True G443164
TU501604 lncRNA downstream 4451 78331582 ~ 78331821 (-) True G443162
TU501602 lncRNA downstream 7844 78328196 ~ 78328428 (-) True G443160
TU501601 lncRNA downstream 9110 78326952 ~ 78327162 (-) True G443159
TU501589 lncRNA downstream 37488 78297768 ~ 78298784 (-) True G443147
TU501608 lncRNA upstream 423 78337189 ~ 78337737 (-) True G443166
TU501609 lncRNA upstream 992 78337758 ~ 78337976 (-) True G443167
TU501615 lncRNA upstream 3649 78340415 ~ 78341873 (-) False G443169
TU501616 lncRNA upstream 3649 78340415 ~ 78341873 (-) True G443169
TU501637 lncRNA upstream 30736 78367502 ~ 78368783 (-) False G443189
XM_021604453.2 mRNA downstream 90442 78239768 ~ 78245830 (-) True LOC110524621
XM_021604447.2 mRNA downstream 348617 77983744 ~ 77987655 (-) True glulb
XM_021604446.2 mRNA downstream 397271 77925215 ~ 77939001 (-) False znf648
XM_021604443.2 mRNA downstream 461429 77871765 ~ 77874843 (-) True gadd45ab
XM_036978450.1 mRNA downstream 694123 77627457 ~ 77642149 (-) True LOC110524609
XM_021604464.2 mRNA upstream 46239 78383005 ~ 78387067 (-) True hyi
XM_021604478.2 mRNA upstream 882387 79219153 ~ 79226639 (-) False LOC110524635
LOC118964722 mRNA upstream 906481 79243247 ~ 79282591 (-) True LOC118964722
XR_005051973.1 mRNA upstream 957493 79294259 ~ 79294385 (-) True LOC118964780
XM_036978488.1 mRNA upstream 1048774 79385540 ~ 79459507 (-) False cdh2
TU501172 other downstream 254262 78081745 ~ 78082010 (-) True G442807
TU500657 other downstream 709058 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 929137 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 1314897 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 1433501 76902382 ~ 76902771 (-) True G441483
TU502514 other upstream 627865 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 886374 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 887237 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 1394221 79730987 ~ 79731536 (-) True G444691
TU503706 other upstream 1645695 79982461 ~ 79987704 (-) False G445115

Expression Profile