RNA id: TU502767


Basic Information

Item Value
RNA id TU502767
length 216
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G444235
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79352850 ~ 79353065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAATCCTctggtttccctttctgttttgttTGTGATTGTCTTTCGTGCATTCCggtgtgttgtattttgagtcCTGTTTTGTCCTTGTTTGGAACGGGATTTTGTTACGTTTTGGATTGAGTAAATCAGTGATTGTTACTCTtatctgtgtcctgcgcctgactccttcgcTATCTTTTAGATAGCCTCTgacagtggtgatcctaactgacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502698 lncRNA downstream 92620 79259305 ~ 79260230 (-) True G444170
TU502695 lncRNA downstream 99237 79253157 ~ 79253613 (-) True G444167
TU502677 lncRNA downstream 129980 79219598 ~ 79222870 (-) False LOC110524635
TU502676 lncRNA downstream 135351 79217282 ~ 79217499 (-) True G444149
TU502672 lncRNA downstream 139161 79213320 ~ 79213689 (-) True G444145
TU502770 lncRNA upstream 1103 79354168 ~ 79354403 (-) True G444238
TU502856 lncRNA upstream 28177 79381242 ~ 79381457 (-) True G444318
TU502850 lncRNA upstream 32477 79385542 ~ 79386788 (-) True cdh2
TU502988 lncRNA upstream 171472 79524537 ~ 79525518 (-) True G444443
TU502995 lncRNA upstream 179441 79532506 ~ 79532738 (-) True G444449
XR_005051973.1 mRNA downstream 58465 79294259 ~ 79294385 (-) True LOC118964780
LOC118964722 mRNA downstream 70259 79243247 ~ 79282591 (-) True LOC118964722
XM_021604478.2 mRNA downstream 126211 79219153 ~ 79226639 (-) False LOC110524635
XM_021604464.2 mRNA downstream 965783 78383005 ~ 78387067 (-) True hyi
XM_021604453.2 mRNA downstream 1107020 78239768 ~ 78245830 (-) True LOC110524621
XM_036978488.1 mRNA upstream 32475 79385540 ~ 79459507 (-) False cdh2
XM_036978489.1 mRNA upstream 33824 79386889 ~ 79450198 (-) False cdh2
XR_005051592.1 mRNA upstream 183519 79536584 ~ 79606825 (-) True LOC118964535
XM_021604482.2 mRNA upstream 512112 79865177 ~ 79896739 (-) False LOC110524638
XM_036978490.1 mRNA upstream 512112 79865177 ~ 79896739 (-) True LOC110524638
TU502678 other downstream 115389 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other downstream 126982 79224003 ~ 79225868 (-) True LOC110524635
TU502514 other downstream 386821 78964631 ~ 78966029 (-) True G444001
TU501172 other downstream 1270840 78081745 ~ 78082010 (-) True G442807
TU500657 other downstream 1725636 77623299 ~ 77627214 (-) False G442381
TU503246 other upstream 377922 79730987 ~ 79731536 (-) True G444691
TU503706 other upstream 629396 79982461 ~ 79987704 (-) False G445115
TU503794 other upstream 823697 80176762 ~ 80177080 (-) True G445197
TU503806 other upstream 872410 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 892878 80245943 ~ 80261505 (-) True G445220

Expression Profile